Parental gene:

C1orf123, ENSCJAG00000004526

Aliases:None
Description:chromosome 1 open reading frame 123 [Source:HGNC Symbol;Acc:26059]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:88449285..88457079(-)


>ENSCJAG00000004526
ATGGGGAAAATCGCGCTGCAGCTCAAAGCCACGCTAGAGAACATCACCAATCTCCGGCCTGTGGGCGAGGACTTCCGGTG
GTATTTGAAGATGAAATGTGGCAACTGTGGTGAGATTTCAGACAAGTGGCAGTACATCCGGCTGATGGACAGTGTGGCAC
TGAAGGGGGGCCGTGGCAGTGCTTCCATGGTCCAGAAGTGCAAGTTGTGTGCAAGAGAAAATTCCATCGATATTTTAAGC
AGCACCATCAAGCCTTACAATGCTGAAGACAATGAGAACTTCAAGACAATAGTGGAATTTGAGTGCCGAGGCCTTGAACC
AGTTGATTTCCAGCCTCAGGCTGGGTTTGCTGCTGAAGGTGTAGAGTCGGGGACAGTCTTCAGTGACATTAATTTGCAGG
AGAAGGACTGGACTGACTATGATGAAAAGGCCCAGGAGTCTGTGGGAATCTACGAGGTCACCCACCAGTTCGTGAAGTGC
TGA

Library Parental gene expression (RPM)
SRP051959_colon 6 .06 RPM
SRP051959_heart 7 .72 RPM
SRP051959_kidney 11 .83 RPM
SRP051959_liver 10 .03 RPM
SRP051959_lung 8 .02 RPM
SRP051959_lymph_node 10 .43 RPM
SRP051959_skeletal_muscle 12 .03 RPM
SRP051959_spleen 8 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000011509 ortholog_one2one 1 retrogene
retro_cpor_1142,
Homo sapiens ENSG00000162384 ortholog_one2one 1 retrogene
retro_hsap_192,
Gorilla gorilla ENSGGOG00000004027 ortholog_one2one 1 retrogene
retro_ggor_271,
Microcebus murinus ENSMICG00000006397 ortholog_one2one 1 retrogene
retro_mmur_1113,
Myotis lucifugus ENSMLUG00000002439 ortholog_one2many 1 retrogene
retro_mluc_101,
Mus musculus ENSMUSG00000028608 ortholog_one2one 1 retrogene
retro_mmus_975,
Nomascus leucogenys ENSNLEG00000017988 ortholog_one2one 1 retrogene
retro_nleu_1001,
Oryctolagus cuniculus ENSOCUG00000029317 ortholog_one2one 1 retrogene
retro_ocun_770,
Otolemur garnettii ENSOGAG00000013324 ortholog_one2one 1 retrogene
retro_ogar_861,
Ochotona princeps ENSOPRG00000009003 ortholog_one2one 2 retrogenes
retro_opri_351, retro_opri_711,
Pongo abelii ENSPPYG00000001336 ortholog_one2one 1 retrogene
retro_pabe_443,
Pan troglodytes ENSPTRG00000000752 ortholog_one2many 1 retrogene
retro_ptro_99,
Rattus norvegicus ENSRNOG00000012724 ortholog_one2one 3 retrogenes
retro_rnor_1999, retro_rnor_2403, retro_rnor_2705,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2948 68.52 98.75
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2. retro_cjac_3149 94.38 100.00
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3. retro_cjac_3186 90.18 69.18
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Download FASTA sequences of all ENSCJAG00000004526 retrocopies