Parental gene:

C1orf123, ENSPPYG00000001336

Aliases:None
Description:chromosome 1 open reading frame 123 [Source:HGNC Symbol;Acc:26059]
Organism:Orangutan (Pongo abelii)
Coordinates:1:176504004..176510284(+)


>ENSPPYG00000001336
ATGGCACCCGCCTTTTACGACGCACCGGAAAGCAACGGCAACGGCCGCAGCCAGCACCGGGCGGAGTGGGCCACCATGGG
GAAAATCGCGCTGCAACTCAAAGCCACGCTGGAGAACATCACCAACCTCCGGCCCGTGGGCGAGGACTTCCGGTGGTACC
TGAAGATGAAATGTGGCAACTGTGGTGAGATTTCGGACAAGTGGCAGTACATCCGGCTGATGGACAGTATGGCACTGAAG
GGGGGCCGTGGCAGTGCTTCCATGGTCCAGAAGTGCAAGCTGTGTGCAAGAGAAAATTCCATCGAGATTTTAAGCAGCAC
CATCAAGCCTTACAATGCTGAAGACAATGAGAACTTCAAGACAATAGTGGAGTTTGAGTGCCGGGGCCTTGAACCAGTTG
ATTTCCAGCCCCAGGCTGGGTTTGCTGCTGAAGGTGTGGAGTCAGGGACAGCCTTCAGTGACATTAATCTGCAGGAGAAG
GACTGGACTGACTATGATGAAAAGGCCCAGGAGTCTGTGGGAATCTATGAGGTCACCCACCAGTTTGTGAAGTGCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 6 .58 RPM
SRP007412_cerebellum 6 .32 RPM
SRP007412_heart 3 .79 RPM
SRP007412_kidney 5 .77 RPM
SRP007412_liver 5 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000004526 ortholog_one2one 3 retrogenes
retro_cjac_2948, retro_cjac_3149, retro_cjac_3186,
Cavia porcellus ENSCPOG00000011509 ortholog_one2one 1 retrogene
retro_cpor_1142,
Homo sapiens ENSG00000162384 ortholog_one2one 1 retrogene
retro_hsap_192,
Gorilla gorilla ENSGGOG00000004027 ortholog_one2one 1 retrogene
retro_ggor_271,
Microcebus murinus ENSMICG00000006397 ortholog_one2one 1 retrogene
retro_mmur_1113,
Myotis lucifugus ENSMLUG00000002439 ortholog_one2many 1 retrogene
retro_mluc_101,
Mus musculus ENSMUSG00000028608 ortholog_one2one 1 retrogene
retro_mmus_975,
Nomascus leucogenys ENSNLEG00000017988 ortholog_one2one 1 retrogene
retro_nleu_1001,
Oryctolagus cuniculus ENSOCUG00000029317 ortholog_one2one 1 retrogene
retro_ocun_770,
Otolemur garnettii ENSOGAG00000013324 ortholog_one2one 1 retrogene
retro_ogar_861,
Ochotona princeps ENSOPRG00000009003 ortholog_one2one 2 retrogenes
retro_opri_351, retro_opri_711,
Pan troglodytes ENSPTRG00000000752 ortholog_one2many 1 retrogene
retro_ptro_99,
Rattus norvegicus ENSRNOG00000012724 ortholog_one2one 3 retrogenes
retro_rnor_1999, retro_rnor_2403, retro_rnor_2705,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_443 67.65 72.97
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Download FASTA sequences of all ENSPPYG00000001336 retrocopies