Parental gene:

ENSCJAG00000004957

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:GL285008.1:24995..36548(-)


>ENSCJAG00000004957
CGCCGTCCCCTATTCCCTGCCATGCCTTTGCATTGGTTGGGCTACGGCTATGCAGCACTGGTTGCTTCCGGCGGGATCTT
TGGCTATGTAAAAACAGGCAGAGTGCCATCCTTGATTGTGGGGCTGTTCTTCGGCAGCCTAGCGGGGCTGGGTTCTTACC
AGCTGTCTCAGGATCCAAAGAACGTTTGGCTTTTCCTAGCTGCTACATCTGGTACCTTTGCTGGTGTTATGGCATTGAGA
TCCTACTACTATGGAAAAGTCATGCCTGTAGGTTTAATCGCAGGTGCCAGACGGAGTTTCGCTCTTGTTACCCAGGCTGG
AGCGCAATGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAGGCAATTCTCCTGCCTCAGCCTCCTGAGTA
GCTGGGATTACAGGCACGCGCCACCACGCCCAGCTAATTTTTTGTATTTTTAG

Library Parental gene expression (RPM)
SRP051959_spleen 2 .50 RPM
SRP051959_skeletal_muscle 3 .30 RPM
SRP051959_lymph_node 2 .26 RPM
SRP051959_lung 3 .03 RPM
SRP051959_liver 2 .45 RPM
SRP051959_kidney 3 .68 RPM
SRP051959_heart 2 .65 RPM
SRP051959_colon 2 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002614 ortholog_one2many 3 retrogenes
retro_amel_1256, retro_amel_939, retro_amel_957,
Bos taurus ENSBTAG00000005808 ortholog_one2many 1 retrogene
retro_btau_970,
Canis familiaris ENSCAFG00000009692 ortholog_many2many 2 retrogenes
retro_cfam_115, retro_cfam_1716,
Dasypus novemcinctus ENSDNOG00000007732 ortholog_many2many 6 retrogenes
retro_dnov_1220, retro_dnov_1547, retro_dnov_1968, retro_dnov_289, retro_dnov_316, retro_dnov_367,
Equus caballus ENSECAG00000026994 ortholog_one2many 1 retrogene
retro_ecab_659,
Erinaceus europaeus ENSEEUG00000009000 ortholog_one2many 1 retrogene
retro_eeur_26,
Felis catus ENSFCAG00000014178 ortholog_many2many 5 retrogenes
retro_fcat_301, retro_fcat_314, retro_fcat_367, retro_fcat_93, retro_fcat_983,
Homo sapiens ENSG00000137210 ortholog_one2many 1 retrogene
retro_hsap_684,
Gorilla gorilla ENSGGOG00000009702 ortholog_many2many 1 retrogene
retro_ggor_4,
Loxodonta africana ENSLAFG00000009795 ortholog_one2many 2 retrogenes
retro_lafr_1233, retro_lafr_1246,
Macropus eugenii ENSMEUG00000000210 ortholog_one2many 1 retrogene
retro_meug_1704,
Mustela putorius furo ENSMPUG00000000613 ortholog_one2many 2 retrogenes
retro_mputfur_1322, retro_mputfur_226,
Mus musculus ENSMUSG00000021361 ortholog_one2many 2 retrogenes
retro_mmus_1634, retro_mmus_2355,
Oryctolagus cuniculus ENSOCUG00000016368 ortholog_one2many 3 retrogenes
retro_ocun_1129, retro_ocun_1348, retro_ocun_284,
Otolemur garnettii ENSOGAG00000012165 ortholog_one2many 3 retrogenes
retro_ogar_1155, retro_ogar_2425, retro_ogar_3462,
Ochotona princeps ENSOPRG00000014366 ortholog_one2many 4 retrogenes
retro_opri_192, retro_opri_29, retro_opri_409, retro_opri_898,
Pongo abelii ENSPPYG00000016225 ortholog_one2many 1 retrogene
retro_pabe_1473,
Rattus norvegicus ENSRNOG00000015437 ortholog_many2many 2 retrogenes
retro_rnor_1595, retro_rnor_33,
Sarcophilus harrisii ENSSHAG00000011456 ortholog_one2many 1 retrogene
retro_shar_177,
Sus scrofa ENSSSCG00000001038 ortholog_one2many 3 retrogenes
retro_sscr_438, retro_sscr_449, retro_sscr_614,
Ictidomys tridecemlineatus ENSSTOG00000022833 ortholog_one2many 1 retrogene
retro_itri_47,
Tursiops truncatus ENSTTRG00000003666 ortholog_one2many 2 retrogenes
retro_ttru_1504, retro_ttru_258,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_725 78.08 64.60
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Download FASTA sequences of all ENSCJAG00000004957 retrocopies