Parental gene:

ENSCJAG00000004999

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:202173799..202175245(-)


>ENSCJAG00000004999
ATGGCTAAACATCATCCTGATTTGATCTTTTGCCGCAAACAGGCTGGTGTTGCCATCGGAAGACTGTGTGAAAAATGTGA
TGGCAAGTGTGTGATTTGTGACTCCTATGTGCGTCCCTGTACTCTGGTTCGCATATGTGATGAGTGTAATTATGGATCTT
ACCAGGGGCGCTGTGTGATCTGCGGAGGCCCTGGGGTCTCTGATGCCTATTATTGTAAGGAGTGTACCATCCAGGAGAAG
GATGGGAAAATGCAAGGTAAGCAAATCTGTGTCAAGACCAGCAATTTGGAGAGCCCTCTCTCTATTCTTTTTATGTCTCT
CTGTGATTATTCTTATTCAGAAATG

Library Parental gene expression (RPM)
SRP051959_spleen 2 .94 RPM
SRP051959_skeletal_muscle 3 .58 RPM
SRP051959_lymph_node 3 .42 RPM
SRP051959_lung 2 .88 RPM
SRP051959_liver 3 .21 RPM
SRP051959_kidney 3 .33 RPM
SRP051959_heart 2 .60 RPM
SRP051959_colon 2 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000015687 ortholog_one2many 1 retrogene
retro_amel_1674,
Canis familiaris ENSCAFG00000001090 ortholog_one2many 1 retrogene
retro_cfam_369,
Echinops telfairi ENSETEG00000010741 ortholog_one2many 1 retrogene
retro_etel_102,
Homo sapiens ENSG00000100410 possible_ortholog 3 retrogenes
retro_hsap_2033, retro_hsap_2647, retro_hsap_2829,
Gorilla gorilla ENSGGOG00000001104 possible_ortholog 2 retrogenes
retro_ggor_1848, retro_ggor_1965,
Latimeria chalumnae ENSLACG00000012094 ortholog_one2many 1 retrogene
retro_lcha_25,
Microcebus murinus ENSMICG00000013520 ortholog_one2many 1 retrogene
retro_mmur_758,
Macaca mulatta ENSMMUG00000011354 possible_ortholog 3 retrogenes
retro_mmul_1390, retro_mmul_1471, retro_mmul_1503,
Mustela putorius furo ENSMPUG00000016398 ortholog_one2many 2 retrogenes
retro_mputfur_359, retro_mputfur_439,
Mus musculus ENSMUSG00000061360 ortholog_one2many 3 retrogenes
retro_mmus_1070, retro_mmus_1071, retro_mmus_1155,
Nomascus leucogenys ENSNLEG00000015481 ortholog_one2one 2 retrogenes
retro_nleu_1205, retro_nleu_653,
Oryctolagus cuniculus ENSOCUG00000012705 ortholog_one2many 1 retrogene
retro_ocun_640,
Otolemur garnettii ENSOGAG00000002839 ortholog_many2many 1 retrogene
retro_ogar_55,
Pongo abelii ENSPPYG00000011870 possible_ortholog 2 retrogenes
retro_pabe_1661, retro_pabe_2324,
Pan troglodytes ENSPTRG00000014427 possible_ortholog 3 retrogenes
retro_ptro_1352, retro_ptro_1917, retro_ptro_2479,
Pteropus vampyrus ENSPVAG00000001162 ortholog_one2many 1 retrogene
retro_pvam_66,
Rattus norvegicus ENSRNOG00000024170 ortholog_one2many 3 retrogenes
retro_rnor_2660, retro_rnor_2704, retro_rnor_2712,
Tarsius syrichta ENSTSYG00000001082 ortholog_one2many 1 retrogene
retro_tsyr_259,
Tursiops truncatus ENSTTRG00000003369 ortholog_one2many 1 retrogene
retro_ttru_1483,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_906 81.48 70.43
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2. retro_cjac_1194 77.46 61.74
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3. retro_cjac_1527 87.65 70.43
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Download FASTA sequences of all ENSCJAG00000004999 retrocopies