Parental gene:

ENSCJAG00000005125

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:107519785..107522968(+)


>ENSCJAG00000005125
ATGACAGATGCCGCTGTGTCCTTCGCCAAGGACTTCCTGGCAGGTGGAGTGGCCGCAGCCATCTCCAAGACGGCGGTAGC
GCCCATCGAGCGGGTCAAGCTGCTGCTGCAGGTACAGCATGCCAGCAAGCAGATCACTGCAGATAAGCAATACAAGGGTA
TTATAGACTGCGTGGTCCGTATTCCCAAGGAGCAGGGAGTCCTGTCCTTCTGGCGCGGTAACCTGGCTAATGTCATCAGA
TACTTCCCCACCCAGGCCCTTAACTTCGCCTTCAAAGATAAATACAAGCAGATCTTCCTGGGTGGTGTGGACAAGAGGAC
CCAGTTTTGGCGCTACTTTGCAGGGAATCTGGCATCAGGCGGTGCTGCTGGGGCCACATCCTTGTGTTTTGTGTACCCTC
TTGATTTTGCCCGTACCCGTCTAGCAGCAGATGTGGGTAAAGCTGGAGCTGAAAGGGAATTCCGAGGCCTCGGCGACTGC
CTGGTTAAGATCTACAAATCTGATGGGATTAAGGGCCTGTACCAAGGCTTTAATGTGTCTGTGCAGGGTATTATCATCTA
CCGAGCTGCCTACTTCGGTATCTATGACACTGCAAAGGGAATGCTTCCAGATCCCAAGAACACTCACATCGTTATCAGCT
GGATGATCGCACAGACTGTCACTGCTGTTGCTGGGTTGACTTCCTATCCATTTGACACTGTTCGCCGCCGCATGATGATG
CAGTCGGGGCGCAAAGGAACTGACATCATGTACACAGGCACACTTGACTGCTGGAGGAAGATTGCTCGTGATGAAGGAGG
CAAAGCTTTCTTCAAGGGTGCATGGTCCAATGTCCTCCGAGGCATGGGTGGTGCTTTTGTACTTGTCTTGTATGATGAAA
TCAAGAAGTACACATAA

Library Parental gene expression (RPM)
SRP051959_spleen 21 .05 RPM
SRP051959_skeletal_muscle 4 .65 RPM
SRP051959_lymph_node 20 .18 RPM
SRP051959_lung 16 .63 RPM
SRP051959_liver 74 .64 RPM
SRP051959_kidney 66 .07 RPM
SRP051959_heart 11 .49 RPM
SRP051959_colon 44 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000143 ortholog_many2many 1 retrogene
retro_amel_1291,
Canis familiaris ENSCAFG00000018384 ortholog_one2many 2 retrogenes
retro_cfam_1473, retro_cfam_1641,
Dasypus novemcinctus ENSDNOG00000008384 ortholog_one2many 1 retrogene
retro_dnov_1894,
Echinops telfairi ENSETEG00000004900 ortholog_many2many 2 retrogenes
retro_etel_23, retro_etel_48,
Felis catus ENSFCAG00000007057 ortholog_many2many 2 retrogenes
retro_fcat_1035, retro_fcat_127,
Loxodonta africana ENSLAFG00000029398 ortholog_one2many 1 retrogene
retro_lafr_844,
Microcebus murinus ENSMICG00000002757 ortholog_one2many 3 retrogenes
retro_mmur_322, retro_mmur_411, retro_mmur_974,
Myotis lucifugus ENSMLUG00000015742 ortholog_many2many 4 retrogenes
retro_mluc_139, retro_mluc_1580, retro_mluc_2564, retro_mluc_86,
Mus musculus ENSMUSG00000016319 possible_ortholog 4 retrogenes
retro_mmus_1173, retro_mmus_1955, retro_mmus_2589, retro_mmus_459,
Oryctolagus cuniculus ENSOCUG00000013268 ortholog_one2many 11 retrogenes
retro_ocun_1002, retro_ocun_1233, retro_ocun_1457, retro_ocun_1694, retro_ocun_1705, retro_ocun_1862, retro_ocun_1877, retro_ocun_1890, retro_ocun_1932, retro_ocun_610, retro_ocun_708,
Otolemur garnettii ENSOGAG00000010008 ortholog_many2many 7 retrogenes
retro_ogar_1131, retro_ogar_1275, retro_ogar_1669, retro_ogar_2161, retro_ogar_2408, retro_ogar_2450, retro_ogar_2474,
Pteropus vampyrus ENSPVAG00000014924 ortholog_one2many 2 retrogenes
retro_pvam_1118, retro_pvam_911,
Rattus norvegicus ENSRNOG00000039980 possible_ortholog 11 retrogenes
retro_rnor_1242, retro_rnor_1364, retro_rnor_1475, retro_rnor_1612, retro_rnor_1904, retro_rnor_1922, retro_rnor_2533, retro_rnor_2758, retro_rnor_721, retro_rnor_722, retro_rnor_723,
Ictidomys tridecemlineatus ENSSTOG00000020438 ortholog_one2many 3 retrogenes
retro_itri_314, retro_itri_532, retro_itri_868,
Tupaia belangeri ENSTBEG00000006008 possible_ortholog 4 retrogenes
retro_tbel_1558, retro_tbel_1860, retro_tbel_4654, retro_tbel_4661,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_373 99.33 100.00
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Download FASTA sequences of all ENSCJAG00000005125 retrocopies