Parental gene: | RPF2, ENSCJAG00000005212 |
| Aliases: | None |
| Description: | ribosome production factor 2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20870] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 4:110626192..110668176(+) |
>ENSCJAG00000005212
ATGGACGCTCTGGATCGAGTAGTAAAGCCCAAAACGAAAAGAGCCAAGAGATTCCTTGAGAAGAGAGAACCGAAACTCAA
TGAAAATATTAAAAATGCCATGCTGATCAAAGGGGGAAATGCAAATGCAACAGTGACACAAGTACTTAAAGATGTGTATG
CACTGAAAAAACCATACAGTGTACTGTATAAAAAGAAAAATATTACAAGACCTTTTGAGGATCAGACATCACTGGAATTC
TTTTCAAAGAAGTCAGATTGTTCTTTATTCATGTTTGGCTCCCATAATAAGAAGCGGCCAAATAATCTAGTCATAGGTCG
TATGTATGACTACCATGTGCTGGATATGATTGAATTAGGTATTGAGAATTTTGTCTCTCTAAAAGACATTAAGAACAGTA
AATGCCCTGAGGGAACAAAACCCATGTTAATATTTGCTGGTGATGATTTTGATGTAACAGAAGATTATAGAAGACTAAAA
AGTCTTCTTATTGATTTCTTCAGAGGCCCTGCAGTATCAAATATCCGCCTGGCTGGATTAGAGTATGTTCTGCACTTCAC
TGCACTGAATGGGAAGATTTACTTTCGAAGCTATAAGCTGCTGTTGAAAAAATCTGGTTGCCGAACACCACGGATTGAAT
TGGAAGAGATGGGACCCTCATTGGATCTGGTTCTGAGGAGGACACACCTGGCATCGGATGACCTTTATAAATTATCTATG
AAAATGCCAAAGGCACTCAAGCCAAAGAAGAAGAAAAATATCTCCCATGATACTTTTGGTACAACTTATGGAAGGATTCA
TATGCAGAAGCAAGACCTAAGCAAACTACAAACCAGGAAAATGAAGGGGTTGAAGAAGCGACCTGCAGAAAGGATAACAG
AAGACCAGGAGAAAAAGTCAAAAAGAATTAAAAAAAATTGA
ATGGACGCTCTGGATCGAGTAGTAAAGCCCAAAACGAAAAGAGCCAAGAGATTCCTTGAGAAGAGAGAACCGAAACTCAA
TGAAAATATTAAAAATGCCATGCTGATCAAAGGGGGAAATGCAAATGCAACAGTGACACAAGTACTTAAAGATGTGTATG
CACTGAAAAAACCATACAGTGTACTGTATAAAAAGAAAAATATTACAAGACCTTTTGAGGATCAGACATCACTGGAATTC
TTTTCAAAGAAGTCAGATTGTTCTTTATTCATGTTTGGCTCCCATAATAAGAAGCGGCCAAATAATCTAGTCATAGGTCG
TATGTATGACTACCATGTGCTGGATATGATTGAATTAGGTATTGAGAATTTTGTCTCTCTAAAAGACATTAAGAACAGTA
AATGCCCTGAGGGAACAAAACCCATGTTAATATTTGCTGGTGATGATTTTGATGTAACAGAAGATTATAGAAGACTAAAA
AGTCTTCTTATTGATTTCTTCAGAGGCCCTGCAGTATCAAATATCCGCCTGGCTGGATTAGAGTATGTTCTGCACTTCAC
TGCACTGAATGGGAAGATTTACTTTCGAAGCTATAAGCTGCTGTTGAAAAAATCTGGTTGCCGAACACCACGGATTGAAT
TGGAAGAGATGGGACCCTCATTGGATCTGGTTCTGAGGAGGACACACCTGGCATCGGATGACCTTTATAAATTATCTATG
AAAATGCCAAAGGCACTCAAGCCAAAGAAGAAGAAAAATATCTCCCATGATACTTTTGGTACAACTTATGGAAGGATTCA
TATGCAGAAGCAAGACCTAAGCAAACTACAAACCAGGAAAATGAAGGGGTTGAAGAAGCGACCTGCAGAAAGGATAACAG
AAGACCAGGAGAAAAAGTCAAAAAGAATTAAAAAAAATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 5 .92 RPM |
| SRP051959_skeletal_muscle | 7 .34 RPM |
| SRP051959_lymph_node | 5 .37 RPM |
| SRP051959_lung | 4 .38 RPM |
| SRP051959_liver | 4 .96 RPM |
| SRP051959_kidney | 6 .90 RPM |
| SRP051959_heart | 5 .49 RPM |
| SRP051959_colon | 3 .53 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000003918 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000006797 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000017121 | ortholog_one2one | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000006169 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000001527 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000197498 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000001469 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000005676 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000021532 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000038510 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012854 | ortholog_one2one | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000016028 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000016925 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000018503 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000000587 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000017151 | ortholog_one2one | 9 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_606 | 80.13 | 97.71 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_933 | 86.15 | 84.31 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1675 | 86.21 | 56.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1768 | 85.16 | 50.65 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2244 | 64.17 | 60.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_2473 | 91.03 | 75.82 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000005212 retrocopies