Parental gene:

DPPA3, ENSCJAG00000005409

Aliases:None
Description:developmental pluripotency associated 3 [Source:HGNC Symbol;Acc:19199]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:20101909..20108818(+)


>ENSCJAG00000005409
ATGGACCCAACACAGAAGTTTAATCTAACCTTCATCCCCGAGTCTTCACAAATGGTCACCGGAGAAACTTACCAGGACGA
CTCAGGGGCCTCTCAAAACTTCTCAGAGACATTGATAAAGAACCTTAGTAAGCTGACTCTCAACGCCAGTACTGAATTCC
CTTCCCCTCTACCAGAGGGTTCACTCCAGCAGTCTGCAGGAGCAGCAATCCTCAGGGAAATCGGAGATGACTTGCCTTAC
AGGAGGAGAGGAGTAAGAACATTGCTGTCTGTGAAGAGAGAAAGGCTGGCAAGATTGAGATACATGTTACTTGGTAGAGG
TCCCAGGCCTGAAAGACCGCTGATGAACACTGGGCTTAAGGGAGTTAAGAATGCATCAAGAAGAGGAATGTTCAAATGTC
CCTGCAGTTTCTGCAAGTCTAGCGGATGGGATCCTTCTGAGAATGCCAGAATGGGGAATTACGACACCAAGCCACTTCAG
CCATAA

Library Parental gene expression (RPM)
SRP051959_colon 0 .00 RPM
SRP051959_heart 0 .00 RPM
SRP051959_kidney 0 .00 RPM
SRP051959_liver 0 .00 RPM
SRP051959_lung 0 .00 RPM
SRP051959_lymph_node 0 .00 RPM
SRP051959_skeletal_muscle 0 .02 RPM
SRP051959_spleen 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000046609 ortholog_one2one 1 retrogene
retro_btau_1001,
Canis familiaris ENSCAFG00000032092 ortholog_one2one 1 retrogene
retro_cfam_1926,
Homo sapiens ENSG00000187569 ortholog_one2one 6 retrogenes
retro_hsap_1043, retro_hsap_1323, retro_hsap_1618, retro_hsap_2648, retro_hsap_4010, retro_hsap_4887,
Gorilla gorilla ENSGGOG00000013040 ortholog_one2one 4 retrogenes
retro_ggor_1849, retro_ggor_2693, retro_ggor_3052, retro_ggor_823,
Mustela putorius furo ENSMPUG00000017530 ortholog_one2many 3 retrogenes
retro_mputfur_1220, retro_mputfur_1452, retro_mputfur_520,
Mus musculus ENSMUSG00000046323 ortholog_one2one 4 retrogenes
retro_mmus_1186, retro_mmus_1682, retro_mmus_1838, retro_mmus_3598,
Nomascus leucogenys ENSNLEG00000026887 ortholog_one2one 2 retrogenes
retro_nleu_2041, retro_nleu_914,
Otolemur garnettii ENSOGAG00000024813 ortholog_one2one 7 retrogenes
retro_ogar_1514, retro_ogar_1618, retro_ogar_1775, retro_ogar_1780, retro_ogar_1964, retro_ogar_2538, retro_ogar_3406,
Pongo abelii ENSPPYG00000004230 ortholog_one2one 6 retrogenes
retro_pabe_1338, retro_pabe_1962, retro_pabe_2323, retro_pabe_3586, retro_pabe_873, retro_pabe_975,
Pan troglodytes ENSPTRG00000004617 ortholog_one2one 7 retrogenes
retro_ptro_1085, retro_ptro_1783, retro_ptro_2701, retro_ptro_2722, retro_ptro_3148, retro_ptro_711, retro_ptro_904,
Rattus norvegicus ENSRNOG00000022950 ortholog_one2many 4 retrogenes
retro_rnor_1249, retro_rnor_1816, retro_rnor_2234, retro_rnor_395,
Tursiops truncatus ENSTTRG00000000751 ortholog_one2one 3 retrogenes
retro_ttru_1293, retro_ttru_1911, retro_ttru_84,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_622 52.78 88.20
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2. retro_cjac_730 84.05 99.38
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3. retro_cjac_1329 65.89 77.64
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4. retro_cjac_1446 54.10 75.16
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5. retro_cjac_1465 57.14 55.90
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6. retro_cjac_1474 56.89 100.00
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7. retro_cjac_2052 64.66 80.75
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8. retro_cjac_2628 78.91 78.26
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9. retro_cjac_3162 79.75 100.00
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10. retro_cjac_4006 56.29 100.00
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Download FASTA sequences of all ENSCJAG00000005409 retrocopies