Parental gene: | DPPA3, ENSCJAG00000005409 |
| Aliases: | None |
| Description: | developmental pluripotency associated 3 [Source:HGNC Symbol;Acc:19199] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:20101909..20108818(+) |
>ENSCJAG00000005409
ATGGACCCAACACAGAAGTTTAATCTAACCTTCATCCCCGAGTCTTCACAAATGGTCACCGGAGAAACTTACCAGGACGA
CTCAGGGGCCTCTCAAAACTTCTCAGAGACATTGATAAAGAACCTTAGTAAGCTGACTCTCAACGCCAGTACTGAATTCC
CTTCCCCTCTACCAGAGGGTTCACTCCAGCAGTCTGCAGGAGCAGCAATCCTCAGGGAAATCGGAGATGACTTGCCTTAC
AGGAGGAGAGGAGTAAGAACATTGCTGTCTGTGAAGAGAGAAAGGCTGGCAAGATTGAGATACATGTTACTTGGTAGAGG
TCCCAGGCCTGAAAGACCGCTGATGAACACTGGGCTTAAGGGAGTTAAGAATGCATCAAGAAGAGGAATGTTCAAATGTC
CCTGCAGTTTCTGCAAGTCTAGCGGATGGGATCCTTCTGAGAATGCCAGAATGGGGAATTACGACACCAAGCCACTTCAG
CCATAA
ATGGACCCAACACAGAAGTTTAATCTAACCTTCATCCCCGAGTCTTCACAAATGGTCACCGGAGAAACTTACCAGGACGA
CTCAGGGGCCTCTCAAAACTTCTCAGAGACATTGATAAAGAACCTTAGTAAGCTGACTCTCAACGCCAGTACTGAATTCC
CTTCCCCTCTACCAGAGGGTTCACTCCAGCAGTCTGCAGGAGCAGCAATCCTCAGGGAAATCGGAGATGACTTGCCTTAC
AGGAGGAGAGGAGTAAGAACATTGCTGTCTGTGAAGAGAGAAAGGCTGGCAAGATTGAGATACATGTTACTTGGTAGAGG
TCCCAGGCCTGAAAGACCGCTGATGAACACTGGGCTTAAGGGAGTTAAGAATGCATCAAGAAGAGGAATGTTCAAATGTC
CCTGCAGTTTCTGCAAGTCTAGCGGATGGGATCCTTCTGAGAATGCCAGAATGGGGAATTACGACACCAAGCCACTTCAG
CCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 0 .00 RPM |
| SRP051959_skeletal_muscle | 0 .02 RPM |
| SRP051959_lymph_node | 0 .00 RPM |
| SRP051959_lung | 0 .00 RPM |
| SRP051959_liver | 0 .00 RPM |
| SRP051959_kidney | 0 .00 RPM |
| SRP051959_heart | 0 .00 RPM |
| SRP051959_colon | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000046609 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000032092 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000187569 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000013040 | ortholog_one2one | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000017530 | ortholog_one2many | 3 retrogenes | |
| Mus musculus | ENSMUSG00000046323 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000026887 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000024813 | ortholog_one2one | 7 retrogenes | |
| Pongo abelii | ENSPPYG00000004230 | ortholog_one2one | 6 retrogenes | |
| Pan troglodytes | ENSPTRG00000004617 | ortholog_one2one | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000022950 | ortholog_one2many | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000000751 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_622 | 52.78 | 88.20 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_730 | 84.05 | 99.38 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1329 | 65.89 | 77.64 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1446 | 54.10 | 75.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_1465 | 57.14 | 55.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_1474 | 56.89 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_cjac_2052 | 64.66 | 80.75 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_cjac_2628 | 78.91 | 78.26 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_cjac_3162 | 79.75 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_cjac_4006 | 56.29 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000005409 retrocopies