Parental gene: | ARPC5L, ENSCJAG00000006730 |
| Aliases: | None |
| Description: | actin related protein 2/3 complex, subunit 5-like [Source:HGNC Symbol;Acc:23366] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:168680635..168689021(+) |
>ENSCJAG00000006730
ATGGCCCGGAACACCCTGTCCTCGCGCTTCCGCCGGGTGGACATAGACGAATTTGACGAGAACAAATTTGTGGACGAGCA
GGAGGAGGCGGCGGCGGCGGCAGCGGAGCCAGGCCCGGACCCGAGCGAGGTGGACGGGCTTCTGCGGCAAGGGGACATGC
TTCGGGCATTCCACGCAGCCTTGAGGAACTCTCCCGTCAACACCAAGAATCAAGCCGTGAAGGAAAGAGCCCAGGGTGTG
GTGCTGAAAGTGCTCACAAACTTCAAGAGCAGTGAGATTGAGCAGGCTGTGCAGTCACTGGACAGAAACGGCGTTGACTT
GTTAATGAAGTACATTTATAAAGGCTTTGAGAAGCCTACAGAAAATAGCAGCGCAGTGCTGCTCCAGTGGCATGAAAAGG
CCTTAGCAGTAGGAGGACTAGGCTCCATTATAAGAGTTCTTACAGCAAGAAAGACTGTTTAA
ATGGCCCGGAACACCCTGTCCTCGCGCTTCCGCCGGGTGGACATAGACGAATTTGACGAGAACAAATTTGTGGACGAGCA
GGAGGAGGCGGCGGCGGCGGCAGCGGAGCCAGGCCCGGACCCGAGCGAGGTGGACGGGCTTCTGCGGCAAGGGGACATGC
TTCGGGCATTCCACGCAGCCTTGAGGAACTCTCCCGTCAACACCAAGAATCAAGCCGTGAAGGAAAGAGCCCAGGGTGTG
GTGCTGAAAGTGCTCACAAACTTCAAGAGCAGTGAGATTGAGCAGGCTGTGCAGTCACTGGACAGAAACGGCGTTGACTT
GTTAATGAAGTACATTTATAAAGGCTTTGAGAAGCCTACAGAAAATAGCAGCGCAGTGCTGCTCCAGTGGCATGAAAAGG
CCTTAGCAGTAGGAGGACTAGGCTCCATTATAAGAGTTCTTACAGCAAGAAAGACTGTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 8 .68 RPM |
| SRP051959_skeletal_muscle | 9 .65 RPM |
| SRP051959_lymph_node | 13 .58 RPM |
| SRP051959_lung | 8 .62 RPM |
| SRP051959_liver | 6 .76 RPM |
| SRP051959_kidney | 6 .52 RPM |
| SRP051959_heart | 9 .73 RPM |
| SRP051959_colon | 10 .32 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016540 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000028753 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020628 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000013924 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000002997 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000013936 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000021362 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000014317 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000007907 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000008398 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1282 | 78.90 | 67.97 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1725 | 82.35 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2744 | 88.96 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3941 | 84.52 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000006730 retrocopies