Parental gene:

RRAGB, ENSCJAG00000007317

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:53590034..53638677(+)


>ENSCJAG00000007317
ATGGAGGAATCTGACTCCGAGAAAAAGATGGAGAAAGAAAATCTGGGGCCGAGAATGGATCCTCCTCTAGGGGAACCGGA
AGGATCGCTTGGGTGGGTGCTACCAAATGCAGCCATGAAGAAAAAGGTGCTGTTGATGGGTAAAAGTGGGTCTGGTAAGA
CCAGCATGAGGTCTATTATCTTTGCAAATTATATTGCCAGAGACACACGTCGCCTTGGTGCAACAATACTAGACCGTATA
CATAGTCTTCAAATTAATAGCAGTTTGAGCACCTACTCTCTCGTAGACTCTGTTGGAAATACAAAGACATTCGATGTAGA
ACATTCTCATGTTCGATTTCTGGGAAACCTGGTATTGAACCTGTGGGATTGTGGTGGGCAAGACACCTTCATGGAAAATT
ATTTTACCAGCCAACGGGACAACATATTCCGAAATGTGGAGGTTCTGATTTATGTCTTCGATGTGGAAAGCCGCGAACTG
GAAAAGGACATGCACTATTACCAATCATGCCTGGAGGCCATTCTGCAAAACTCTCCAGATGCCAAAATATTTTGCTTGGT
ACACAAAATGGATCTGGTACAGGAGGATCAACGGGACCTGATTTTTAAAGAGCGAGAAGAAGATTTGAGGCGTTTGTCTC
GCCCATTGGAATGTTCTTGTTTCCGAACATCTATCTGGGATGAAACTCTCTATAAGGCTTGGTCCAGCATAGTTTATCAG
CTGATTCCCAATGTTCAGCAGCTAGAAATGAACCTAAGGAATTTTGCTGAAATTATCGAAGCAGATGAAGTACTTCTGTT
TGAGAGAGCCACTTTTCTGGTGATTTCTCACTATCAGTGTAAAGAACAGCGTGATGCTCATAGATTTGAGAAAATAAGCA
ACATTATTAAGCAGTTCAAGCTGAGCTGCAGCAAGCTGGCTGCCTCTTTCCAGAGTATGGAAGTCAGGAATTCTAACTTC
GCTGCTTTCATTGACATCTTTACATCCAACACTTACGTGATGGTTGTGATGTCTGATCCGTCCATTCCTTCTGCAGCTAC
TCTGATCAACATCCGCAATGCCAGGAAACACTTTGAAAAACTGGAAAGAGTGGATGGACCAAAGCAGTGTCTTCTCATGC
GCTAA

Library Parental gene expression (RPM)
SRP051959_colon 2 .66 RPM
SRP051959_heart 6 .21 RPM
SRP051959_kidney 7 .28 RPM
SRP051959_liver 3 .90 RPM
SRP051959_lung 5 .95 RPM
SRP051959_lymph_node 5 .16 RPM
SRP051959_skeletal_muscle 6 .73 RPM
SRP051959_spleen 6 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012920 ortholog_one2one 1 retrogene
retro_amel_1842,
Canis familiaris ENSCAFG00000016503 ortholog_one2one 1 retrogene
retro_cfam_421,
Cavia porcellus ENSCPOG00000011266 ortholog_one2one 1 retrogene
retro_cpor_86,
Equus caballus ENSECAG00000006020 ortholog_one2one 1 retrogene
retro_ecab_608,
Felis catus ENSFCAG00000013932 ortholog_one2one 1 retrogene
retro_fcat_21,
Homo sapiens ENSG00000083750 ortholog_one2one 1 retrogene
retro_hsap_4,
Gorilla gorilla ENSGGOG00000011501 ortholog_one2one 1 retrogene
retro_ggor_65,
Loxodonta africana ENSLAFG00000016144 ortholog_one2one 1 retrogene
retro_lafr_102,
Myotis lucifugus ENSMLUG00000015720 ortholog_one2one 1 retrogene
retro_mluc_40,
Macaca mulatta ENSMMUG00000017635 ortholog_one2one 1 retrogene
retro_mmul_249,
Mustela putorius furo ENSMPUG00000003730 ortholog_one2one 1 retrogene
retro_mputfur_87,
Mus musculus ENSMUSG00000041658 ortholog_one2one 1 retrogene
retro_mmus_159,
Nomascus leucogenys ENSNLEG00000016350 ortholog_one2one 1 retrogene
retro_nleu_13,
Oryctolagus cuniculus ENSOCUG00000008666 possible_ortholog 1 retrogene
retro_ocun_166,
Otolemur garnettii ENSOGAG00000000345 ortholog_one2one 1 retrogene
retro_ogar_675,
Procavia capensis ENSPCAG00000003417 ortholog_one2one 1 retrogene
retro_pcap_6,
Pongo abelii ENSPPYG00000020398 ortholog_one2one 1 retrogene
retro_pabe_191,
Pan troglodytes ENSPTRG00000021955 ortholog_one2one 1 retrogene
retro_ptro_48,
Rattus norvegicus ENSRNOG00000003160 ortholog_one2many 1 retrogene
retro_rnor_2,
Sus scrofa ENSSSCG00000029800 ortholog_one2many 1 retrogene
retro_sscr_15,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_117 97.76 90.46
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000007317 retrocopies