Parental gene:

RRAGB, ENSCPOG00000011266

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_170:1211929..1257959(-)


>ENSCPOG00000011266
ATGGAAGAATGTGGCTCTGAGAAAAAGATGGAGAAGGAAAATCTGGGGCCGAGAATGGATCCTCCTCTAGGGGAACCACA
AGGATCGCTTGGGTGGGTGAAGGGAAAAACAAGTGCCTCTACTGAAGTGCTGTTGATGGGTAAAAGTGGATCTGGTAAGA
CCAGCATGAGATCTATTATCTTTGCAAACTATATAGCCAGAGACAAACGTCGTCTTGGTGCAACAATACTAGACCGTTTA
CATAGTCTTCAAATTAATAGCAGTTTGAGCACCTACTCTCTCGTAGACTCTGTTGGAAGTACAAAGACATTTGATGTAGA
ACATTCTCATGTTCAATTTCTGGGAAACCTGGTATTGAACCTGTGGGACTGTGGTGGACAAGACAGCTTCATGGAAAATT
ATTTCACTAGCCAACGGGACAACATCTTCCAAAATGTGGAAGTTCTAATTTATGTTTTTGATGTGGAAAGCCGTGAGCTT
GAAAAGGACATGCACTATTATCAGTCATGCCTAGAGGCTATTCTTCAGAACTCTCCAGATGCCAGAATTTTTTGCTTGGT
ACACAAAATGGATCTGGTACAGGAGGATCAACGGGACCTGATTTTTAGAGAGCGAGAAGAAGATCTGAGACGTTTGTCTC
GCCCATTGGAATGTTCTTGTTTCCGAACATCTATTTGGGATGAAACTCTTTATAAGGCATGGTCCAGCATTGTTTATCAC
CTGATTCCCAATGTTCAGCAACTGGAAATGAACCTAAGAAATTTTGCTGAAATTATTGAAGCTGATGAAGTACTTCTGTT
TGAGAGAGCTACTTTTCTGGTGATTTCTCATTATCAGTGTAAAGAACAGCGTGATGCCCATAGATTTGAGAAAATCAGCA
ACATTATTAAACAATTCAAACTGAGTTGCAGCAAACTGGCTGCCTCTTTCCAGAGTATGGAAGTCAGGAACTCTAACTTT
GCTGCTTTCATTGATATCTTTACATCTAACACTTATGTGATGGTCGTGATGTCTGATCCATCCATTCCTTCTGCAGCAAC
TCTGATCAACATCCGCAATGCCAGGAAGCACTTTGAAAAGCTGGAAAGAGTGGATGGACCAAAGCAGTGTCTTCTTATGT
GCTAA

Library Parental gene expression (RPM)
SRP017611_brain 7 .59 RPM
SRP017611_kidney 0 .31 RPM
SRP017611_liver 0 .30 RPM
SRP040447_lung 1 .08 RPM
SRP040447_skeletal_muscle 0 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012920 ortholog_one2one 1 retrogene
retro_amel_1842,
Canis familiaris ENSCAFG00000016503 ortholog_one2one 1 retrogene
retro_cfam_421,
Callithrix jacchus ENSCJAG00000007317 ortholog_one2one 1 retrogene
retro_cjac_117,
Equus caballus ENSECAG00000006020 ortholog_one2one 1 retrogene
retro_ecab_608,
Felis catus ENSFCAG00000013932 ortholog_one2one 1 retrogene
retro_fcat_21,
Homo sapiens ENSG00000083750 ortholog_one2one 1 retrogene
retro_hsap_4,
Gorilla gorilla ENSGGOG00000011501 ortholog_one2one 1 retrogene
retro_ggor_65,
Loxodonta africana ENSLAFG00000016144 ortholog_one2one 1 retrogene
retro_lafr_102,
Myotis lucifugus ENSMLUG00000015720 ortholog_one2one 1 retrogene
retro_mluc_40,
Macaca mulatta ENSMMUG00000017635 ortholog_one2one 1 retrogene
retro_mmul_249,
Mustela putorius furo ENSMPUG00000003730 ortholog_one2one 1 retrogene
retro_mputfur_87,
Mus musculus ENSMUSG00000041658 ortholog_one2one 1 retrogene
retro_mmus_159,
Nomascus leucogenys ENSNLEG00000016350 ortholog_one2one 1 retrogene
retro_nleu_13,
Oryctolagus cuniculus ENSOCUG00000008666 possible_ortholog 1 retrogene
retro_ocun_166,
Otolemur garnettii ENSOGAG00000000345 ortholog_one2one 1 retrogene
retro_ogar_675,
Procavia capensis ENSPCAG00000003417 ortholog_one2one 1 retrogene
retro_pcap_6,
Pongo abelii ENSPPYG00000020398 ortholog_one2one 1 retrogene
retro_pabe_191,
Pan troglodytes ENSPTRG00000021955 ortholog_one2one 1 retrogene
retro_ptro_48,
Rattus norvegicus ENSRNOG00000003160 ortholog_one2many 1 retrogene
retro_rnor_2,
Sus scrofa ENSSSCG00000029800 ortholog_one2many 1 retrogene
retro_sscr_15,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_86 95.57 72.46
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Download FASTA sequences of all ENSCPOG00000011266 retrocopies