Parental gene:

KHDC3L, ENSCJAG00000009947

Aliases:None
Description:KH domain containing 3-like, subcortical maternal complex member [Source:HGNC Symbol;Acc:33699]
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:71644407..71646131(+)


>ENSCJAG00000009947
ATGGACACTCCCAGACGGTTTCCGACGCTCGTGCAACTGATGCAGCCAAAAGCAATGTCATTCGAGGTGCTCGGTCAGCT
CCCCAAGCAGTTCTCCTGGTTCCACTCTGAGTTTCTGAAGAATCCGAAGGTAGTTCGCCTTGAGGTTTGGCTGGTGGAAA
AGATCTTCGGCAGAGGCGGAGAGCGCATCCCGCAAGTCCAGGGTCTGTCCCAAATCCTGATTCACGTGAATCACTTGGAC
CCCAGCGGCGAGGCTGAGATCTTGATATTTGGGAGGCCTTCTTACCAGGAGGACACAATCAAGATGATCGTGAACTTGGC
TGACTATCACCGCCAGCTCCAGGCGAAAGGCTCAGGAAAGGCCCTCGCCCAGGATATAGCCACTCAGAAGGCCGAAACCC
AGCGGTCTTCAATAGAAGTCCGGGAAGCCGGGACCCAGCGTTCGGTGGAGGTCCGGGAGGCCTGGACCCAGCGTTCGGTG
GAGGTCCGGGAGGTCGGGACACAGGGTTCTCCGGTGGAGGTGCGGGAGGCCGGGACCCAGCAGTCCCTCAAGGCTGCCAG
TGAGTCGGGGACCCAGCGATCTCCCGAAGCTGCCAGCAAGGCACGGACCCAGCGGTTTTACGTGGATGCCCGGGACCCAG
TTACTAGATTATGA

Library Parental gene expression (RPM)
SRP051959_spleen 0 .21 RPM
SRP051959_skeletal_muscle 0 .20 RPM
SRP051959_lymph_node 0 .02 RPM
SRP051959_lung 0 .07 RPM
SRP051959_liver 0 .06 RPM
SRP051959_kidney 0 .13 RPM
SRP051959_heart 0 .77 RPM
SRP051959_colon 0 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007887 ortholog_one2one 1 retrogene
retro_amel_1880,
Callithrix jacchus ENSCJAG00000009962 within_species_paralog 1 retrogene
retro_cjac_3033,
Myotis lucifugus ENSMLUG00000004469 ortholog_one2one 1 retrogene
retro_mluc_2196,
Ochotona princeps ENSOPRG00000013565 ortholog_one2one 3 retrogenes
retro_opri_322, retro_opri_406, retro_opri_651,
Sorex araneus ENSSARG00000003714 ortholog_one2many 1 retrogene
retro_sara_631,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1153 81.44 88.94
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Download FASTA sequences of all ENSCJAG00000009947 retrocopies