RetrogeneDB ID: | retro_sara_631 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_245143:218691..219168(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSARG00000003714 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.36 % |
Parental protein coverage: | 76.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MATSPQFPTLVQLEQREGAFFEVHGNLTKKPDWFLSDYLKSPKAVHLEGWMVEAIFGRGGKHIPHVECTS |
MAT..QFP.LVQLEQ.EGAFF.VHGNLTKK..WFL.DYLKSPKAVHLEGW..EAIF.RGGKHIPHVECTS | |
Retrocopy | MATTQQFPKLVQLEQPEGAFFKVHGNLTKKLYWFLFDYLKSPKAVHLEGWLMEAIFSRGGKHIPHVECTS |
Parental | QTLLHVNRWDPAGKAEILIFGRPHYQLDVSKMIWNLADYHRQLRALRSQKTLVQETGTRRSPDRFREAGT |
QTLL.VN.WDPA..AEILIFGRP.YQLDV.K.I.NLA.YHRQLRA.RSQKTLVQ.TGT.RS.....EA.T | |
Retrocopy | QTLLRVNWWDPACEAEILIFGRP*YQLDVFKIIRNLAYYHRQLRAQRSQKTLVQDTGTQRSLNALQEAAT |
Parental | QRSPDALREAATQRSRDSL |
.RSPD.L.EAATQ...DS. | |
Retrocopy | LRSPDVLCEAATQSNLDSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007887 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009947 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004469 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000013565 | 3 retrocopies | |
Sorex araneus | ENSSARG00000003714 | 1 retrocopy |
retro_sara_631 ,
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