RetrogeneDB ID: | retro_opri_322 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_5216:412562..413009(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KHDC3L | ||
Ensembl ID: | ENSOPRG00000013565 | ||
Aliases: | None | ||
Description: | KH domain containing 3-like, subcortical maternal complex member [Source:HGNC Symbol;Acc:33699] |
Percent Identity: | 89.93 % |
Parental protein coverage: | 91.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LQQREGELSQVLGNLTKPPKWFHSEFLKSPKAVRLEAWLVEAIFGPGGEHIPHVECVSNTLLHVNEWDPE |
LQQR.GELSQVLGNLTKPPKWFHSEFLKSPKAVRLEAWLVEAIFGPGGEHIPHVECVSNTLLHVN.WDPE | |
Retrocopy | LQQRKGELSQVLGNLTKPPKWFHSEFLKSPKAVRLEAWLVEAIFGPGGEHIPHVECVSNTLLHVNQWDPE |
Parental | GDAEILICGRPYYQKDVSKLIMNLADYHRQLRLQSSKKAGRPQSPVEVHGVGAPPSPTHVGEASTRQSQT |
G.AEILICG.PYYQKDVSKLIMN.ADYH.QL.LQSSKKAGRPQSPVEVH.V...PSPTHVGEAS..QSQT | |
Retrocopy | GNAEILICGQPYYQKDVSKLIMNSADYHYQLWLQSSKKAGRPQSPVEVHEVETLPSPTHVGEASM*QSQT |
Parental | KVDEAGTQG |
KV.EA.TQG | |
Retrocopy | KVNEAETQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007887 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009947 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004469 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000013565 | 3 retrocopies |
retro_opri_322 , retro_opri_406, retro_opri_651,
|
Sorex araneus | ENSSARG00000003714 | 1 retrocopy |