Parental gene: | DRG1, ENSCJAG00000011009 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:194211781..194242228(+) |
>ENSCJAG00000011009
ATGAGCAGCACCTTAGCTAAGATCGCGGAGATAGAAGCTGAGATGGCTCGGACTCAAAAGAACAAGGCCACAGCACACCA
CCTAGGGCTGCTTAAGGCTCGTCTTGCTAAGCTTCGTCGAGAACTCATTACTCCAAAGGGTGGTGGTGGTGGAGGTCCAG
GAGAAGGTTTTGATGTGGCCAAGACAGGTGATGCTCGAATTGGATTTGTTGGTTTTCCATCTGTGGGGAAGTCAACATTG
CTTAGTAACCTGGCAGGGGTGTATTCTGAGGTAGCAGCCTATGAATTCACTACTCTGACCACTGTGCCTGGTGTCATCAG
ATACAAAGGTGCCAAGATCCAGCTCCTGGATCTCCCAGGTATCATTGAAGGTGCCAAGGATGGGAAAGGTAGAGGTCGTC
AAGTCATTGCAGTGGCCCGAACCTGTAACTTGATCCTGATTGTTTTGGATGTCCTGAAACCCTTGGGACATAAGAAGATA
ATTGAAAATGAACTGGAAGGCTTTGGCATTCGCTTGAACAGCAAACCCCCCAACATTGGCTTTAAGAAGAAGGACAAGGG
AGGCATTAATCTCACAGCTACTTGCCCCCAGAGTGAGCTGGATGCTGAAACTGTGAAAAGCATTCTGGCCGAATACAAGA
TTCATAATGCTGATGTGACTCTACGTAGTGATGCTACAGCTGATGACCTCATTGATGTGGTGGAAGGAAACAGAGTTTAT
ATCCCCTGTATCTATGTGTTAAATAAGATTGACCAAATCTCCATTGAGGAATTGGATATCATCTATAAGGTGCCTCACTG
TGTACCCATCTCTGCCCATCACCGTTGGAATTTTGATGACCTATTGGAAAAGATCTGGGACTATCTGAAACTAGTGAGAA
TTTACACCAAACCCAAAGGCCAGTTACCAGATTACACATCCCCAGTGGTGCTTCCTTACTCCAGGACCACAGTGGAGGAT
TTCTGCATGAAGATTCACAAAAATCTTATCAAAGAATTTAAATATGCTCTGGTCTGGGGTCTCTCTGTGAAACACAATCC
TCAGAAAGTGGGTAAAGACCATACGTTGGAGGATGAGGATGTCATTCAAATTGTGAAGAAGTGA
ATGAGCAGCACCTTAGCTAAGATCGCGGAGATAGAAGCTGAGATGGCTCGGACTCAAAAGAACAAGGCCACAGCACACCA
CCTAGGGCTGCTTAAGGCTCGTCTTGCTAAGCTTCGTCGAGAACTCATTACTCCAAAGGGTGGTGGTGGTGGAGGTCCAG
GAGAAGGTTTTGATGTGGCCAAGACAGGTGATGCTCGAATTGGATTTGTTGGTTTTCCATCTGTGGGGAAGTCAACATTG
CTTAGTAACCTGGCAGGGGTGTATTCTGAGGTAGCAGCCTATGAATTCACTACTCTGACCACTGTGCCTGGTGTCATCAG
ATACAAAGGTGCCAAGATCCAGCTCCTGGATCTCCCAGGTATCATTGAAGGTGCCAAGGATGGGAAAGGTAGAGGTCGTC
AAGTCATTGCAGTGGCCCGAACCTGTAACTTGATCCTGATTGTTTTGGATGTCCTGAAACCCTTGGGACATAAGAAGATA
ATTGAAAATGAACTGGAAGGCTTTGGCATTCGCTTGAACAGCAAACCCCCCAACATTGGCTTTAAGAAGAAGGACAAGGG
AGGCATTAATCTCACAGCTACTTGCCCCCAGAGTGAGCTGGATGCTGAAACTGTGAAAAGCATTCTGGCCGAATACAAGA
TTCATAATGCTGATGTGACTCTACGTAGTGATGCTACAGCTGATGACCTCATTGATGTGGTGGAAGGAAACAGAGTTTAT
ATCCCCTGTATCTATGTGTTAAATAAGATTGACCAAATCTCCATTGAGGAATTGGATATCATCTATAAGGTGCCTCACTG
TGTACCCATCTCTGCCCATCACCGTTGGAATTTTGATGACCTATTGGAAAAGATCTGGGACTATCTGAAACTAGTGAGAA
TTTACACCAAACCCAAAGGCCAGTTACCAGATTACACATCCCCAGTGGTGCTTCCTTACTCCAGGACCACAGTGGAGGAT
TTCTGCATGAAGATTCACAAAAATCTTATCAAAGAATTTAAATATGCTCTGGTCTGGGGTCTCTCTGTGAAACACAATCC
TCAGAAAGTGGGTAAAGACCATACGTTGGAGGATGAGGATGTCATTCAAATTGTGAAGAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 15 .90 RPM |
| SRP051959_skeletal_muscle | 17 .67 RPM |
| SRP051959_lymph_node | 14 .47 RPM |
| SRP051959_lung | 12 .97 RPM |
| SRP051959_liver | 12 .93 RPM |
| SRP051959_kidney | 15 .18 RPM |
| SRP051959_heart | 12 .47 RPM |
| SRP051959_colon | 12 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000007040 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000032601 | ortholog_one2many | 6 retrogenes | |
| Ciona intestinalis | ENSCING00000003305 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000010791 | ortholog_one2many | 1 retrogene | |
| Ciona savignyi | ENSCSAVG00000006503 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000001312 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000185721 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000011185 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000007033 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000019099 | ortholog_one2many | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000012810 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000020457 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000027001 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000014272 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000014187 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000010160 | ortholog_one2many | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_855 | 97.02 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1104 | 90.83 | 65.40 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2246 | 95.98 | 67.85 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2606 | 93.46 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000011009 retrocopies