Parental gene:

EDF1, ENSCJAG00000011166

Aliases:None
Description:endothelial differentiation-related factor 1 [Source:HGNC Symbol;Acc:3164]
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:180987179..180992484(-)


>ENSCJAG00000011166
ATGGCCGAGAGCGACTGGGACACGGTGACCGTGCTGCGCAAGAAGGGCCCTACGGCCGCCCAGGCCAAGTCCAAGCAGGC
TATCTTAGCAGCACAGAGACGAGGAGAGGATGTAGAAACTTCCAAGAAATGGGCTGCTGGCCAGAACAAACAGCATTCTA
TCACCAAGAACACAGCCAAGCTGGACCGGGAGACGGAGGAGCTGCACCATGACAGGGTGACCCTGGAGGTGGGCAAAGTG
ATCCAGCAGGGTCGGCAGAGCAAGGGACTCACGCAGAAGGACCTGGCCACGAAAATCAATGAGAAGCCACAGGTGATTGC
GGACTATGAGAGTGGACGGGCCATCCCCAATAACCAGGTGCTGGGCAAAATCGAGCGGGCCATCGGCCTCAAGCTTCGGG
GGAAGGACATTGGAAAGCCCATCGAGAAGGGGCCTAGGGCGAAATGA

Library Parental gene expression (RPM)
SRP051959_spleen 12 .86 RPM
SRP051959_skeletal_muscle 27 .34 RPM
SRP051959_lymph_node 18 .42 RPM
SRP051959_lung 15 .99 RPM
SRP051959_liver 17 .52 RPM
SRP051959_kidney 19 .08 RPM
SRP051959_heart 23 .31 RPM
SRP051959_colon 13 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013266 ortholog_one2many 2 retrogenes
retro_amel_1569, retro_amel_996,
Canis familiaris ENSCAFG00000019544 ortholog_one2many 4 retrogenes
retro_cfam_1283, retro_cfam_1812, retro_cfam_363, retro_cfam_895,
Erinaceus europaeus ENSEEUG00000009565 ortholog_one2many 1 retrogene
retro_eeur_635,
Loxodonta africana ENSLAFG00000026812 ortholog_one2many 1 retrogene
retro_lafr_751,
Macropus eugenii ENSMEUG00000015037 possible_ortholog 7 retrogenes
retro_meug_108, retro_meug_1742, retro_meug_1805, retro_meug_2070, retro_meug_38, retro_meug_598, retro_meug_773,
Microcebus murinus ENSMICG00000016498 ortholog_one2many 1 retrogene
retro_mmur_312,
Macaca mulatta ENSMMUG00000005051 possible_ortholog 1 retrogene
retro_mmul_89,
Monodelphis domestica ENSMODG00000017329 ortholog_one2many 1 retrogene
retro_mdom_1713,
Mustela putorius furo ENSMPUG00000011008 ortholog_one2many 1 retrogene
retro_mputfur_1377,
Mus musculus ENSMUSG00000015092 ortholog_one2many 3 retrogenes
retro_mmus_3324, retro_mmus_688, retro_mmus_809,
Rattus norvegicus ENSRNOG00000016272 ortholog_one2many 4 retrogenes
retro_rnor_1407, retro_rnor_2005, retro_rnor_2007, retro_rnor_2616,
Sorex araneus ENSSARG00000007191 possible_ortholog 1 retrogene
retro_sara_39,
Tupaia belangeri ENSTBEG00000014060 ortholog_one2many 4 retrogenes
retro_tbel_1404, retro_tbel_1950, retro_tbel_3538, retro_tbel_967,
Tursiops truncatus ENSTTRG00000002668 ortholog_one2many 2 retrogenes
retro_ttru_165, retro_ttru_894,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_374 97.97 100.00
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Download FASTA sequences of all ENSCJAG00000011166 retrocopies