RetrogeneDB ID: | retro_cfam_363 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 10:51921610..51921850(+) | ||
Located in intron of: | ENSCAFG00000030961 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EDF1 | ||
Ensembl ID: | ENSCAFG00000019544 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.75 % |
Parental protein coverage: | 54.05 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | RETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKL |
..T..L..D.VTLE.GKVIQQG.Q.KGLT.KD.A.KIN.KPQV..DY.SG..IPNN.VLGKI.RAI.LKL | |
Retrocopy | KNTTKLDQDQVTLEAGKVIQQGQQNKGLT*KDEAMKINGKPQVTGDYQSGPVIPNN*VLGKIKRAISLKL |
Parental | RGKDIGKPIE |
R.KDI.KP.E | |
Retrocopy | RAKDIRKPTE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 130 .20 RPM |
SRP017611_brain | 0 .00 RPM | 55 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 118 .54 RPM |
SRP017611_liver | 0 .00 RPM | 35 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013266 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000019544 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000011166 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009565 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000026812 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015037 | 7 retrocopies | |
Microcebus murinus | ENSMICG00000016498 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000005051 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017329 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011008 | 1 retrocopy | |
Mus musculus | ENSMUSG00000015092 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000016272 | 4 retrocopies | |
Sorex araneus | ENSSARG00000007191 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014060 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000002668 | 2 retrocopies |