Parental gene:

ENSCJAG00000011188

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:106448506..106470604(-)


>ENSCJAG00000011188
ATGGGGGCGTCCGCGCGGCTGCTGCGCGCGGTGATCATGGGGGCCCCAGGCTCGGGCAAGGGCACCGTGTCGTCACGCAT
CACCAAACATTTCGAACTGAAGCACCTCTCCAGCGGGGACCTGCTCCGGGACAACATGCTGCGGGGCACAGAAATTGGCG
TGTTAGCCAAGGCTTTCATTGACCAAGGGAAACTCATCCCAGATGATGTCATGACTCGGCTGGCCCTTCATGAACTGAAA
AATCTCACCCAGTATAACTGGCTTTTGGATGGTTTTCCAAGGACGCTTCCACAGGCAGAAGCTCTAGATAGAGCTTATCA
GATCGACACAGTGATTAACCTGAATGTACCCTTTGAGGTCATTAAACAACGCCTTACTGCTCGGTGGATTCATCCCGCCA
GTGGCCGAGTCTACAACATTGAATTCAACCCTCCCAAAACTGTGGGCATTGATGATCTGACTGGAGAGCCTCTCATTCAG
CGTGAGGATGATAAACCAGAGACAGTTATCAAGAGACTAAAGGCTTATGAAGACCAAACAAAGCCAGTCCTGGAATATTA
CCAGAAAAAAGGGGTGTTGGAAACATTTTCTGGAACAGAAACCAACAAGATTTGGCCCTATGTATATGCTTTCCTACAAA
CTAAAGTTCCACAAACAAGCCAGAAAGCTTCAGTTACTCCATGA

Library Parental gene expression (RPM)
SRP051959_colon 41 .49 RPM
SRP051959_heart 48 .99 RPM
SRP051959_kidney 85 .13 RPM
SRP051959_liver 112 .16 RPM
SRP051959_lung 24 .24 RPM
SRP051959_lymph_node 22 .76 RPM
SRP051959_skeletal_muscle 35 .31 RPM
SRP051959_spleen 37 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002640 ortholog_one2many 3 retrogenes
retro_amel_1009, retro_amel_1916, retro_amel_1931,
Bos taurus ENSBTAG00000017147 ortholog_one2many 1 retrogene
retro_btau_323,
Callithrix jacchus ENSCJAG00000016835 within_species_paralog 1 retrogene
retro_cjac_1856,
Equus caballus ENSECAG00000011235 ortholog_one2many 2 retrogenes
retro_ecab_317, retro_ecab_914,
Echinops telfairi ENSETEG00000000829 ortholog_one2many 1 retrogene
retro_etel_57,
Felis catus ENSFCAG00000028063 ortholog_one2many 2 retrogenes
retro_fcat_162, retro_fcat_1982,
Homo sapiens ENSG00000147853 ortholog_one2many 3 retrogenes
retro_hsap_1163, retro_hsap_3228, retro_hsap_555,
Gorilla gorilla ENSGGOG00000028122 ortholog_one2many 3 retrogenes
retro_ggor_2195, retro_ggor_503, retro_ggor_908,
Loxodonta africana ENSLAFG00000001126 ortholog_one2many 1 retrogene
retro_lafr_205,
Microcebus murinus ENSMICG00000013112 ortholog_one2many 3 retrogenes
retro_mmur_1474, retro_mmur_1559, retro_mmur_1579,
Myotis lucifugus ENSMLUG00000017272 ortholog_one2many 1 retrogene
retro_mluc_535,
Macaca mulatta ENSMMUG00000000143 ortholog_many2many 2 retrogenes
retro_mmul_2032, retro_mmul_898,
Mustela putorius furo ENSMPUG00000005006 ortholog_one2many 2 retrogenes
retro_mputfur_1163, retro_mputfur_890,
Nomascus leucogenys ENSNLEG00000008885 ortholog_one2many 3 retrogenes
retro_nleu_2638, retro_nleu_2653, retro_nleu_948,
Oryctolagus cuniculus ENSOCUG00000011411 ortholog_one2many 1 retrogene
retro_ocun_716,
Otolemur garnettii ENSOGAG00000007477 ortholog_one2many 2 retrogenes
retro_ogar_3482, retro_ogar_3492,
Pongo abelii ENSPPYG00000019245 ortholog_one2many 3 retrogenes
retro_pabe_2676, retro_pabe_3588, retro_pabe_967,
Pan troglodytes ENSPTRG00000020742 ortholog_one2many 5 retrogenes
retro_ptro_1785, retro_ptro_2180, retro_ptro_2895, retro_ptro_416, retro_ptro_796,
Pteropus vampyrus ENSPVAG00000015751 ortholog_one2many 1 retrogene
retro_pvam_269,
Sus scrofa ENSSSCG00000023595 ortholog_one2many 1 retrogene
retro_sscr_641,
Ictidomys tridecemlineatus ENSSTOG00000000021 ortholog_one2many 1 retrogene
retro_itri_933,
Tupaia belangeri ENSTBEG00000008054 ortholog_one2many 3 retrogenes
retro_tbel_1463, retro_tbel_3247, retro_tbel_3397,
Tursiops truncatus ENSTTRG00000016524 ortholog_one2many 1 retrogene
retro_ttru_1036,
Vicugna pacos ENSVPAG00000009187 ortholog_one2many 1 retrogene
retro_vpac_137,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1940 62.14 61.23
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Download FASTA sequences of all ENSCJAG00000011188 retrocopies