Parental gene:

POLR2C, ENSCJAG00000012016

Aliases:None
Description:polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Source:HGNC Symbol;Acc:9189]
Organism:Marmoset (Callithrix jacchus)
Coordinates:20:11480688..11488715(+)


>ENSCJAG00000012016
ATGCCGTACGCTAACCAGCCCACCGTGCGGATCACGGAGCTCACCGACGAGAATGTCAAGTTCATCATCGAGAACACCGA
CCTGGCGGTGGCCAATTCTATTCGGAGGGTCTTCATCGCTGAGGTGCCCATAATAGCCATTGACTGGGTTCAAATTGATG
CCAATTCCTCAGTCCTTCATGATGAGTTCATCGCTCACAGGCTTGGATTAATTCCCCTCATTAGTGATGACATTGTGGAC
AAGCTGCAGTACTCTCGGGACTGCACATGTGAGGAGTTCTGCCCTGAGTGCTCAGTGGAGTTCACCCTCGACGTGCGGTG
CAATGAAGACCAGACTCGACATGTCACATCTCGAGACCTCATCTCCAACAGCCCCCGGGTTATTCCGGTGACATCCCGGA
ACCGAGATAATGACCCCAATGACTACGTGGAGCAGGATGACATTCTCATCGTCAAGCTGAGAAAGGGCCAGGAGCTGAGA
CTTCGGGCCTATGCCAAAAAGGGCTTTGGCAAGGAGCATGCCAAATGGAACCCTACCGCAGGGGTGGCTTTTGAATATGA
TCCAGACAATGCCCTGAGGCACACAGTGTACCCCAAGCCTGAGGAATGGCCAAAGAGTGAGTACTCGGAGCTGGATGAGG
ATGAGTCGCAGGCTCCCTATGACCCCAATGGCAAGCCAGAGAGGTTTTACTACAATGTGGAGTCCTGTGGCTCTCTGCGT
CCTGAAACCATTGTTCTGTCAGCCCTCTCTGGATTGAAGAAGAAACTGAGTGATTTACAAACTCAATTAAGCCACGAGAT
CCAGAGTGACGTGCTAACCATAAATTAG

Library Parental gene expression (RPM)
SRP051959_colon 11 .34 RPM
SRP051959_heart 18 .52 RPM
SRP051959_kidney 20 .83 RPM
SRP051959_liver 21 .25 RPM
SRP051959_lung 13 .94 RPM
SRP051959_lymph_node 16 .87 RPM
SRP051959_skeletal_muscle 21 .84 RPM
SRP051959_spleen 14 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000008720 ortholog_one2one 1 retrogene
retro_cfam_688,
Choloepus hoffmanni ENSCHOG00000002986 ortholog_one2one 1 retrogene
retro_chof_1988,
Dipodomys ordii ENSDORG00000000081 ortholog_one2one 1 retrogene
retro_dord_704,
Echinops telfairi ENSETEG00000004185 ortholog_one2one 1 retrogene
retro_etel_1953,
Homo sapiens ENSG00000102978 ortholog_one2one 1 retrogene
retro_hsap_2496,
Gorilla gorilla ENSGGOG00000012415 ortholog_one2one 1 retrogene
retro_ggor_1557,
Myotis lucifugus ENSMLUG00000015833 ortholog_one2many 2 retrogenes
retro_mluc_129, retro_mluc_236,
Macaca mulatta ENSMMUG00000020474 ortholog_one2one 1 retrogene
retro_mmul_1674,
Mus musculus ENSMUSG00000031783 ortholog_one2one 1 retrogene
retro_mmus_1723,
Nomascus leucogenys ENSNLEG00000003034 ortholog_one2one 1 retrogene
retro_nleu_1431,
Otolemur garnettii ENSOGAG00000016866 ortholog_one2many 1 retrogene
retro_ogar_3361,
Ochotona princeps ENSOPRG00000006979 ortholog_one2one 1 retrogene
retro_opri_445,
Pongo abelii ENSPPYG00000007390 ortholog_one2one 1 retrogene
retro_pabe_1839,
Pan troglodytes ENSPTRG00000008157 ortholog_one2one 1 retrogene
retro_ptro_1448,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2026 72.47 62.55
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Download FASTA sequences of all ENSCJAG00000012016 retrocopies