Parental gene:

OSTF1, ENSCJAG00000012808

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:93653776..93714738(-)


>ENSCJAG00000012808
ATGTCGAAGCCGCCACCGAAACCAGTCAAACCAGGGCAAGTTAAAGTCTTCAGAGCGCTGTATACGTTTGAACCCAGAAC
TCCAGATGAATTATACTTTGAGGAAGGTGATATTATCTACATTACTGACATGAGTGATACCAATTGGTGGAAAGGCACCT
CCAAAGGCAGGACTGGACTAATTCCAAGCAACTATGTGGCTGAGCAGGCAGAATCCATTGACAATCCATTACATGAAGCA
GCAAAAAGAGGCAACTTGAGCTGGTTGAGAGAATGTTTGGACAACAGAGTGGGCGTTAATGGTTTAGACAAAGCTGGAAG
CACTGCCTTATACTGGGCTTGCCATGGGGGTCACAAAGATATAGTGGAAATGCTGTTTACTCAACCAAATATTGAACTGA
ACCAGCAGAACAAGTTGGGAGACACAGCTTTGCATGCTGCTGCCTGGAAGGGTTATGCAGATATTGTCCAGTTGCTTCTG
GCAAAAGGTGCTAGAACAGACTTAAGAAACAATGAGAAGAAGCTGGCCTTGGACATGGCTACCAATGCTGCCTGTGCATC
TCTTCTGAAAAAGAAACAGGGAACAGATGCAGTTCGAACATTAAGCAATGCTGAGGACTATCTGGATGATGAAGACTCAG
ATTAA

Library Parental gene expression (RPM)
SRP051959_spleen 57 .35 RPM
SRP051959_skeletal_muscle 7 .51 RPM
SRP051959_lymph_node 45 .61 RPM
SRP051959_lung 32 .94 RPM
SRP051959_liver 24 .39 RPM
SRP051959_kidney 28 .60 RPM
SRP051959_heart 16 .26 RPM
SRP051959_colon 31 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007953 within_species_paralog 1 retrogene
retro_cjac_858,
Cavia porcellus ENSCPOG00000007226 ortholog_one2one 1 retrogene
retro_cpor_1049,
Dipodomys ordii ENSDORG00000002933 ortholog_one2one 1 retrogene
retro_dord_698,
Erinaceus europaeus ENSEEUG00000008320 ortholog_one2one 2 retrogenes
retro_eeur_545, retro_eeur_683,
Felis catus ENSFCAG00000022374 ortholog_one2one 1 retrogene
retro_fcat_1869,
Homo sapiens ENSG00000134996 ortholog_one2one 1 retrogene
retro_hsap_1058,
Gorilla gorilla ENSGGOG00000011920 ortholog_one2one 1 retrogene
retro_ggor_836,
Macaca mulatta ENSMMUG00000010401 ortholog_one2one 1 retrogene
retro_mmul_836,
Nomascus leucogenys ENSNLEG00000001854 ortholog_one2one 1 retrogene
retro_nleu_2502,
Otolemur garnettii ENSOGAG00000002603 ortholog_one2one 1 retrogene
retro_ogar_2962,
Pongo abelii ENSPPYG00000019300 ortholog_one2one 1 retrogene
retro_pabe_883,
Pan troglodytes ENSPTRG00000021031 ortholog_one2one 1 retrogene
retro_ptro_720,
Rattus norvegicus ENSRNOG00000012156 ortholog_one2one 2 retrogenes
retro_rnor_936, retro_rnor_937,
Sus scrofa ENSSSCG00000005273 ortholog_one2one 1 retrogene
retro_sscr_979,
Tursiops truncatus ENSTTRG00000003081 ortholog_one2one 1 retrogene
retro_ttru_492,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3249 72.68 95.33
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Download FASTA sequences of all ENSCJAG00000012808 retrocopies