Parental gene:

Ostf1, ENSRNOG00000012156

Aliases:Ostf1, Sh3d3
Description:Osteoclast-stimulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6P686]
Organism:Rat (Rattus norvegicus)
Coordinates:1:241874540..241895663(+)


>ENSRNOG00000012156
GGGCAAGTTAAAGTCTTCAGAGCTCTATATACGTTTGAACCGAGAACTCCAGATGAATTATACTTCGAAGAAGGAGATAT
TATCTACATCACTGACATGAGCGACACCAGCTGGTGGAAAGGAACATGCAAAGGCAGAACAGGACTGATCCCAAGCAACT
ATGTGGCTGAGCAGGCAGAATCCATTGACAATCCATTGCATGAGGCTGCAAAAAGAGGCAACTTGAGCTGGCTGAGGGAG
TGCTTGGACAACCGAGTGGGCGTGAACGGCCTGGACAAGGCTGGAAGCACAGCCCTGTACTGGGCCTGCCACGGTGGCCA
CAAAGACATAGTGGAGGTTCTGTTTACTCAGCCGAATGTGGAACTGAACCAGCAGAACAAGCTGGGAGACACGGCTCTGC
ACGCAGCTGCCTGGAAGGGTTATGCAGACATTGTCCAGTTGCTACTAGCAAAAGGCGCGAGGACAGACTTGAGAAACAAT
GAGAAGAAGCTAGCCTTGGACATGGCCACCAACGCTGCCTGTGCATCGCTCCTGAAGAAGAAGCAGGCAACAGATGGGGC
TCGAACGTTAAGCAATGCTGAGGACTACCTCGATGATGAAGACTCAGACTGA

Library Parental gene expression (RPM)
SRP017611_brain 10 .57 RPM
SRP017611_kidney 29 .24 RPM
SRP017611_liver 12 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000012808 ortholog_one2one 1 retrogene
retro_cjac_3249,
Cavia porcellus ENSCPOG00000007226 ortholog_one2one 1 retrogene
retro_cpor_1049,
Dipodomys ordii ENSDORG00000002933 ortholog_one2one 1 retrogene
retro_dord_698,
Erinaceus europaeus ENSEEUG00000008320 ortholog_one2one 2 retrogenes
retro_eeur_545, retro_eeur_683,
Felis catus ENSFCAG00000022374 ortholog_one2one 1 retrogene
retro_fcat_1869,
Homo sapiens ENSG00000134996 ortholog_one2one 1 retrogene
retro_hsap_1058,
Gorilla gorilla ENSGGOG00000011920 ortholog_one2one 1 retrogene
retro_ggor_836,
Macaca mulatta ENSMMUG00000010401 ortholog_one2one 1 retrogene
retro_mmul_836,
Nomascus leucogenys ENSNLEG00000001854 ortholog_one2one 1 retrogene
retro_nleu_2502,
Otolemur garnettii ENSOGAG00000002603 ortholog_one2one 1 retrogene
retro_ogar_2962,
Pongo abelii ENSPPYG00000019300 ortholog_one2one 1 retrogene
retro_pabe_883,
Pan troglodytes ENSPTRG00000021031 ortholog_one2one 1 retrogene
retro_ptro_720,
Sus scrofa ENSSSCG00000005273 ortholog_one2one 1 retrogene
retro_sscr_979,
Tursiops truncatus ENSTTRG00000003081 ortholog_one2one 1 retrogene
retro_ttru_492,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_936 93.81 55.67
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2. retro_rnor_937 93.81 55.67
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Download FASTA sequences of all ENSRNOG00000012156 retrocopies