Parental gene:

LPCAT2, ENSCJAG00000012902

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:20:9482049..9568149(+)


>ENSCJAG00000012902
ATGAGCCGGTGCGCCCAGGCGGCGGCCGTGGCGGCCACAGTGCCAGGTGCCGGCGTCGGGAACGTGGGGATACGGCCGCC
CATGGTGCCCCGTCAGGCGTCCTTCTTCCCGCCGCCGGTGCCAAACCCCTTCGTCCAGCAGACGCAGATCGGCTCCGCGA
GGCGGGTCCAGATTTTCCTTCTTGGGATTATCCTGCTTCCAATTCGTGCCTTATTGGTTGCGTTAATTTTATTACTTGCA
TGGCCATTTGCTGCAATTTCAACAGTATGCTGTCCTGAAAAGCAGACCCACCCAGTAACTGGTTGGAGGAGGAAAATTAC
TCAAACAGCTTTGAAGTTTCTGGGTCGTGCTATGTTCTTTTCAATGGGGTTTATAGTTGCTGTAAAAGGAAAGGTCGCAA
GTCCTTTGGAAGCACCAGTCTTTGTTGCTGCCCCTCATTCAACATTCTTTGATGGAATTGCCTGTATTGTAGCTGGGCTA
CCTTCTATGGTATCTGGGAATTCAAATAATCAGTTTTCAAGTTTTAAAGGACTGTTACGGGCTGTGCAACCAGTATTGGT
GTCCCGTGTAGATCCAGATTCCCGAAAAAACACAATAAATGAAATAATAAAGCGAGCAACATCAGGAGGAGAATGGCCCC
AGATACTAGTTTTCCCAGAAGGTACTTGTACTAATCGTTCCTGTTTGATTACTTTTAAACCAGGAGCCTTCATCCCAGGA
GTTCCAGTGCAGCCAATCCTCCTCAGATACCCAAACAAGCTGGATACTGTGACCTGGACATGGCAAGGATATACATTCAT
TCAGCTTTGTATGCTTACTTTCTGCCAGCTCTTCACAAAGGTAGAAGTTGAGTTTATGCCCGTTCAAGTACCAAATGATG
AAGAAAAAAACGATCCTGTCCTTTTTGCCAGTAGAGTCCGGAATTTAATGGCAGAAGCTCTGGGAATACCAGTAACAGAT
CATACCTATGAAGATTGCAGATTGATGATTTCAGCAGGACAGCTAACGTTGCCTATGGAAGCTGGGCTGGTGGAATTTAC
TAAAATTAGTCAGAAATTGAAATTAGATTGGGATGGTGTTCGTAGGCATTTGGATGAATATGCATCTATTGCGAGTTCCT
CAAAAGGAGGAAGAATTGGAATTGAAGAATTTGCCGAGTATTTAAAGTTGCCTGTTTCAGATGTCTTGAGACAACTTTTT
GCACTCTTTGACAGGAACCATGATGGCAGCATCGACTTCCGAGAGTATGTGATTGGCTTGGCTGTCTTGTGCCACCCTGC
CAACACGGAGGAGATCATCCAGGTGGCATTTAAGCTCTTTGATGTTGATGAGGATGGCTATATAACAGAGGAAGAGTTCT
CCACCATTCTACAGGCTTCCCTTGGAGTGCCTGACCTTGATGTTTCTGGTCTCTTCAAGGAAATAGCCCAAGGGTACTCA
ATTTCTTACGAGGAATTTAAAATTTTTGCCTTAAAGCACCCAGAATATGCAAAGATATTTACAACATACCTAGAACTCCA
GACATGCCATGTATTTTCATTACCAAAAGAAGTCCAGACAGCTCCCTCCATCACCAGTAATAAAGTCAGCCCTGAAAAGC
ATGAAGACAGTACCTCAGACAAAAAAGATGACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 22 .84 RPM
SRP051959_skeletal_muscle 5 .39 RPM
SRP051959_lymph_node 8 .31 RPM
SRP051959_lung 13 .91 RPM
SRP051959_liver 5 .76 RPM
SRP051959_kidney 3 .02 RPM
SRP051959_heart 2 .58 RPM
SRP051959_colon 11 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019272 ortholog_one2one 1 retrogene
retro_btau_64,
Dasypus novemcinctus ENSDNOG00000006859 ortholog_one2one 1 retrogene
retro_dnov_1735,
Dipodomys ordii ENSDORG00000013193 ortholog_one2one 1 retrogene
retro_dord_399,
Equus caballus ENSECAG00000009649 ortholog_one2one 1 retrogene
retro_ecab_865,
Erinaceus europaeus ENSEEUG00000014277 ortholog_one2one 1 retrogene
retro_eeur_109,
Homo sapiens ENSG00000087253 ortholog_one2one 1 retrogene
retro_hsap_185,
Gorilla gorilla ENSGGOG00000005144 ortholog_one2one 1 retrogene
retro_ggor_266,
Loxodonta africana ENSLAFG00000003965 ortholog_one2one 1 retrogene
retro_lafr_66,
Myotis lucifugus ENSMLUG00000004008 ortholog_one2one 1 retrogene
retro_mluc_88,
Macaca mulatta ENSMMUG00000004478 ortholog_one2one 1 retrogene
retro_mmul_392,
Mus musculus ENSMUSG00000033192 ortholog_one2one 1 retrogene
retro_mmus_270,
Nomascus leucogenys ENSNLEG00000001258 ortholog_one2one 1 retrogene
retro_nleu_994,
Pongo abelii ENSPPYG00000007358 ortholog_one2one 1 retrogene
retro_pabe_445,
Pan troglodytes ENSPTRG00000008124 ortholog_one2one 2 retrogenes
retro_ptro_171, retro_ptro_2928,
Pteropus vampyrus ENSPVAG00000007801 ortholog_one2one 1 retrogene
retro_pvam_173,
Rattus norvegicus ENSRNOG00000016643 ortholog_one2one 1 retrogene
retro_rnor_309,
Sorex araneus ENSSARG00000011914 ortholog_one2one 1 retrogene
retro_sara_88,
Sarcophilus harrisii ENSSHAG00000012383 ortholog_one2one 1 retrogene
retro_shar_116,
Tursiops truncatus ENSTTRG00000001182 ortholog_one2one 1 retrogene
retro_ttru_188,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2945 62.12 60.29
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Download FASTA sequences of all ENSCJAG00000012902 retrocopies