RetrogeneDB ID: retro_mluc_88

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429877:2687528..2689064(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000017219
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: LPCAT2
• Ensembl ID: ENSMLUG00000004008
• Aliases: None
• Description: None

Sequence

>retro_mluc_88
GTCGGCCCCATGTCTCAGCGCTCCTCCTCGCACGTGGACGGGTGGGAGTCCGTCGGCCGTCTCTTAAGGAGCAAGTCCTT
GTACCCGCCCGCGGTGGCCAACCCCTTCGTGCAGCGCACGCACATCAGCGCGTGGCGCTGGGCCTCCATCCTCCTCCTGG
GGACCCTGCTGGTGGCGGTGCGGGTGTCCTGCCTGGCCGTCCTCTTCGTCTTCCTCTGGCCCGTGACCATGCTGTGCACC
ATAGGCCGCTCTGCTCGCCCAGGCAAGCCCGCCAAGAGTTGGAGAAGAAAACTGGTGCAACAACCCCTCAGGTTCTTGTT
TCAGACGTGTTTCCTTGCCTCCGGCTTCCTGGTGAAAGTGAAAGGGAAAAAGGCAACCCGAAACGAGGCCCCCCTCTTGG
TGACCGCACCGCACTCCACTTTCTTCGACGCCATCGCCTGTGTGGTGGCGGGGTTGCCCTCCGTGGTCTCTGCGAGTGAA
AACGCACGGATCCCAGTGGCCGGGAAATTCCTGTTGTCAACGCAGCCGGTGCTTGTGGCTCGAGAGGACCCCAACTCCAG
GAAGACTACCCGGGATGAAATCCAGAAGCGAGTGACCTCCAAAGGGGCGTGGCCACAGATCATGATTTTCCCAGAGGGAG
TGTGTACCAATCGCTCGTGTCTGATCACTTTTAGGCTAGGGGCCTTCTCCCCAGGGGTGCCTGTGCAGCCAGTGCTGCTC
AGGTACCCGAACAGCCTGGACACGGTGACCTGGACCTGGCAGGGCTTGACAGCCTTCCAGGTGTGTATGCTGACCCTGAG
CCAGCTCTTCACCAGGGTAGAAGTGGAGTTTATGCCTGTGTACGTCCCGAGTGACCAGGAAAAAAAAGACCCCATCCTTT
TTGCCAATGCAGTGCGGGTCAACATGGCCAATGCTCTGGGGGTGCCCGTGACAGACCACACGTACGAAGACTGCAAACTA
ATGATCAGCGCAGGCAACCTTCAACTACCCATGGAAGCTGGTTTGGTGGAATTTACAAAGATCAGCCGGAAGTTGAAGTT
AGATTGGGATAGTATTCATCAGCATTTGGATGAATATGCTGCAATCGCAGTTGCCTCAAAAGGAGGGAAGATAGGAATTG
AAGAATTTGCAAGTTTTTTAAATCTCCCAATTTCAGAGCCCTTCAGACAACTGTTTGCCCTCTTTGACAGGAATAACGAC
GGCAGCATAGACTTCAGAGAGTACGTGATAGGGCTGACTGTCCTGTGCAATCCTGCCAACACGGCCGAGATTCTGCGAAT
ATCCTTTAAGCTTTTTGATCTTGATGAGGATGGCTTCATAACACAACCGGAGTTGGCTGCTATACTTCAGGCAGCTTTTG
GGGTGCCTGACCTTGATGTTTCCAGTCTCTTTCAGGGAATAGCTAGACAGAACTCAGAACACATTTCATACAAGGACTTT
ATGAAATTTGCTTTGAAGCACCCAGAATATGCCATTCTATTTAATTCATATTTAGAACTCCAGGCAGCCTATATATACAC
ATCACCACAAGAACAA

Alignment

ORF - retro_mluc_88 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.58 %
• Parental protein coverage: 89.52 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RQASFFPPPVRNPFVQQTRLGAGRRIQTFFLGIVLLPVRALLLGLVLLLAWPFAAISTVCCPDKPTHPIT
          R..S..PP.V.NPFVQ.T...A.R......LG..L..VR...L.......WP.....T......P..P..
Retrocopy RSKSLYPPAVANPFVQRTHISAWRWASILLLGTLLVAVRVSCLAVLFVFLWPVTMLCTIGRSARPGKPAK

Parental  GWRRKITHPVLKFLGRAMFFSMGFSVTVKGKIASPVEAPIFVVAPHSTFFDGIACVAAGLPSMVSRNENV
          .WRRK.....L.FL....F...GF.V.VKGK.A...EAP..V.APHSTFFD.IACV.AGLPS.VS..EN.
Retrocopy SWRRKLVQQPLRFLFQTCFLASGFLVKVKGKKATRNEAPLLVTAPHSTFFDAIACVVAGLPSVVSASENA

Parental  QVPLIGRLLRALQPVLVSRVDPDSRKNTINEIIRRATSGGEWPQILVFPEGTCTNRSCLITFKPGAFIPA
          ..P..G..L...QPVLV.R.DP.SRK.T..EI..R.TS.G.WPQI..FPEG.CTNRSCLITF..GAF.P.
Retrocopy RIPVAGKFLLSTQPVLVAREDPNSRKTTRDEIQKRVTSKGAWPQIMIFPEGVCTNRSCLITFRLGAFSPG

Parental  VPVQPILLRYPNKLDTVTWTWQGYTFFQLCVLTFCQPYTRVEVEFMPVQAPNDEEKRDPVLFAGRVRNLM
          VPVQP.LLRYPN.LDTVTWTWQG.T.FQ.C.LT..Q..TRVEVEFMPV..P.D.EK.DP.LFA..VR..M
Retrocopy VPVQPVLLRYPNSLDTVTWTWQGLTAFQVCMLTLSQLFTRVEVEFMPVYVPSDQEKKDPILFANAVRVNM

Parental  AEALEIPVTDHTYEDCRLMISAGQLTLPMEAGLVEFTKISRKLKLDWDGIRKHLDEYATIASSSKGGRIG
          A.AL..PVTDHTYEDC.LMISAG.L.LPMEAGLVEFTKISRKLKLDWD.I..HLDEYA.IA..SKGG.IG
Retrocopy ANALGVPVTDHTYEDCKLMISAGNLQLPMEAGLVEFTKISRKLKLDWDSIHQHLDEYAAIAVASKGGKIG

Parental  IEEFAEYLKLPVSDVLRQLFALFDRNHDGSIDFREYVIGLAVLCNPANTEEIIQVAFKLFDLDEDGYISE
          IEEFA..L.LP.S...RQLFALFDRN.DGSIDFREYVIGL.VLCNPANT.EI....FKLFDLDEDG.I..
Retrocopy IEEFASFLNLPISEPFRQLFALFDRNNDGSIDFREYVIGLTVLCNPANTAEILRISFKLFDLDEDGFITQ

Parental  EEFSTILQASLGVPDLDGSGLFKEIAQGDS--VSYEEFKSFALKHPEYARIFTTYLELQAGHVFSLPEE
          .E...ILQA..GVPDLD.S.LF..IA...S...SY..F..FALKHPEYA..F..YLELQA......P.E
Retrocopy PELAAILQAAFGVPDLDVSSLFQGIARQNSEHISYKDFMKFALKHPEYAILFNSYLELQAAYIYTSPQE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_88 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 20 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000019272	1 retrocopy	retro_btau_64,
Callithrix jacchus	ENSCJAG00000012902	1 retrocopy	retro_cjac_2945,
Dasypus novemcinctus	ENSDNOG00000006859	1 retrocopy	retro_dnov_1735,
Dipodomys ordii	ENSDORG00000013193	1 retrocopy	retro_dord_399,
Equus caballus	ENSECAG00000009649	1 retrocopy	retro_ecab_865,
Erinaceus europaeus	ENSEEUG00000014277	1 retrocopy	retro_eeur_109,
Homo sapiens	ENSG00000087253	1 retrocopy	retro_hsap_185,
Gorilla gorilla	ENSGGOG00000005144	1 retrocopy	retro_ggor_266,
Loxodonta africana	ENSLAFG00000003965	1 retrocopy	retro_lafr_66,
Myotis lucifugus	ENSMLUG00000004008	1 retrocopy	retro_mluc_88 ,
Macaca mulatta	ENSMMUG00000004478	1 retrocopy	retro_mmul_392,
Mus musculus	ENSMUSG00000033192	1 retrocopy	retro_mmus_270,
Nomascus leucogenys	ENSNLEG00000001258	1 retrocopy	retro_nleu_994,
Pongo abelii	ENSPPYG00000007358	1 retrocopy	retro_pabe_445,
Pan troglodytes	ENSPTRG00000008124	2 retrocopies	retro_ptro_171, retro_ptro_2928,
Pteropus vampyrus	ENSPVAG00000007801	1 retrocopy	retro_pvam_173,
Rattus norvegicus	ENSRNOG00000016643	1 retrocopy	retro_rnor_309,
Sorex araneus	ENSSARG00000011914	1 retrocopy	retro_sara_88,
Sarcophilus harrisii	ENSSHAG00000012383	1 retrocopy	retro_shar_116,
Tursiops truncatus	ENSTTRG00000001182	1 retrocopy	retro_ttru_188,