Parental gene:

ARPC1B, ENSCJAG00000015849

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:12575328..12599052(-)


>ENSCJAG00000015849
ATGGCCTACCACAGCTTCCTGGTGGAGCCCATCAGCTGCCACGCCTGGAACAAGGACCGTACCCAGATCGCCATCTGCCC
CAACAACCATGAGGTGCACATCTATGAGAAGAGTGGCACCAAGTGGACGAAGGTGCATGAGCTCAAGGAGCACAATGGGC
AGGTGACGGGCATCGACTGGGCTCCTGAGAGTAACCGAATTGTGACCTGTGGCACAGACCGCAATGCCTACGTGTGGACA
CTGAAGGGCCGCACGTGGAAGCCCACGCTGGTCATCCTGCGGATCAACAGGGCCGCCCGCTGTGTGCGCTGGGCCCCCAA
CGAGAACAAGTTCGCTGTGGGCAGTGGCTCCCGTGTCATCTCCATCTGTTATTTCGAGCAGGAGAATGACTGGTGGTGGG
TTTGCAAGCACATCAAGAAGCCCATCCGCTCCACCGTCCTCAGCCTGGACTGGCACCCCAACAATGTGCTGCTGGCTGCT
GGCTCCTGCGACTTCAAGTGCCGGATCTTTTCAGCCTACATCAAGGAGGTGGAGGAGCGGCCGGCACCCACCCCATGGGG
CTCTAAGATGCCCTTTGGGGAGCTGATGTTTGAGTCCAGCAGTAGCTGCGGCTGGGTACATGGCGTCTGCTTCTCAGCCA
GTGGGAGCCGCGTGGCCTGGGTGAGCCATGACAGCACCTTGTGCCTGGCTGATGCCGAGAAGAAGATGGCCGTCGCGACC
CTGGCCTCTGAAACACTGCCGCTGCTGGCGCTGACCTTCATCACAGACAACAGCCTGGTGGCAGCGGGCCATGACTGCTT
CCCGGTGCTGTTCACCTACGACGCCGCTGCGGGGACGCTGAGCTTCGGCGGGCGGCTGGATGTGCCCAAGCAGAGCTCAC
AGCGTGGCTTGACGGCCCGCGAGCGCTTCCAGAACCTTGACAAGAAGGCGAACTCCGAGGGCAGCACGGCCGCAGGCTCG
GGCCTGGACTCGCTGCACAAGAATAGCGTCAGCCAGATCTCGGTGCTCAGCGGGGGCAAGGCCAAGTGCTCACAGTTTTG
CACCACTGGCATGGACGGTGGCATGAGTATCTGGGATGTGAAGAGCTTGGAGTCAGCCTTGAAGGACCTCAAGATCAAAT
GA

Library Parental gene expression (RPM)
SRP051959_spleen 62 .06 RPM
SRP051959_skeletal_muscle 5 .63 RPM
SRP051959_lymph_node 50 .39 RPM
SRP051959_lung 36 .96 RPM
SRP051959_liver 24 .84 RPM
SRP051959_kidney 13 .02 RPM
SRP051959_heart 14 .24 RPM
SRP051959_colon 45 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000046248 ortholog_one2one 2 retrogenes
retro_btau_1547, retro_btau_473,
Canis familiaris ENSCAFG00000015081 ortholog_one2one 1 retrogene
retro_cfam_1568,
Callithrix jacchus ENSCJAG00000015859 within_species_paralog 3 retrogenes
retro_cjac_2141, retro_cjac_2165, retro_cjac_2263,
Echinops telfairi ENSETEG00000009924 ortholog_one2one 2 retrogenes
retro_etel_1076, retro_etel_1275,
Gorilla gorilla ENSGGOG00000013186 ortholog_one2one 2 retrogenes
retro_ggor_1337, retro_ggor_1455,
Microcebus murinus ENSMICG00000017424 ortholog_one2one 1 retrogene
retro_mmur_602,
Myotis lucifugus ENSMLUG00000010933 ortholog_one2one 1 retrogene
retro_mluc_974,
Mustela putorius furo ENSMPUG00000016522 ortholog_one2one 1 retrogene
retro_mputfur_1578,
Mus musculus ENSMUSG00000029622 ortholog_one2one 2 retrogenes
retro_mmus_1340, retro_mmus_3623,
Otolemur garnettii ENSOGAG00000010872 ortholog_one2one 2 retrogenes
retro_ogar_2380, retro_ogar_3087,
Rattus norvegicus ENSRNOG00000000991 ortholog_one2one 2 retrogenes
retro_rnor_1105, retro_rnor_967,
Sus scrofa ENSSSCG00000007625 ortholog_one2one 1 retrogene
retro_sscr_374,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2365 91.47 68.63
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Download FASTA sequences of all ENSCJAG00000015849 retrocopies