Parental gene:

ARPC1B, ENSSSCG00000007625

Aliases:None
Description:actin related protein 2/3 complex, subunit 1B, 41kDa [Source:HGNC Symbol;Acc:704]
Organism:Pig (Sus scrofa)
Coordinates:3:6524629..6527834(-)


>ENSSSCG00000007625
ATGCACGCTTCGTCTCACTCCCTGCACCCGCCCGTCTCTCCCGCAGAGATTGCCATCTGCCCCAACAACCACGAGGTGCA
CATCTACGAGAAGAGTGGGAACAAGTGGGTCCAGGTGCACGAGCTCAAGGAGCACAATGGGCAGGTGACAGGCATTGACT
GGGCCCCTGAGAGTAACCGCATCGTGACTTGCGGCACAGACCGCAACGCCTACGTGTGGACGCTGAAGGGCCGCACGTGG
AAGCCCACCCTTGTCATCCTGCGCATCAACCGCGCTGCTCGCTGTGTGCGCTGGGCCCCCCAGGAGAACAAGTTCGCTGT
GGGCAGTGGCTCCCGTGTCATCTCCATCTGCTATTTTGAGCAGGAAAATGACTGGTGGGTGTGCAAGCACATCAAGAAGC
CCATTCGCTCCACCGTCCTCAGCCTGGACTGGCACCCCAACAACGTGCTCCTGGCCGCCGGCTCCTGCGACTTCAAGTGC
CGGATCTTCTCAGCCTACATCAAGGAGGTGGAGGAGCGGCCAGCACCCACCCCCTGGGGCTCCAAGATGCCCTTCGGGGA
GCTGATGTTTGAGTCCAGCAGTAGCTGCGGCTGGGTGCACGGCGTCTGCTTTTCAGCCAGTGGTAGCCGCGTGGCCTGGG
TCAGTCATGACAGCACCGTGTGCCTGGCTGATGCCGACAAGAAGATGGCCGTGGCGACTCTGGCCTCTGAAACGCTACCA
CTGCTGGCTCTGACCTTCATCACGGAAAACAGTCTGGTGGCAGCGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 205 .87 RPM
SRP014902_testis 48 .09 RPM
SRP018288_heart 13 .02 RPM
SRP018288_kidney 23 .74 RPM
SRP018288_liver 17 .59 RPM
SRP018288_lung 145 .71 RPM
SRP018856_adipose 95 .15 RPM
SRP035408_brain 2 .86 RPM
SRP035408_liver 8 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000046248 ortholog_one2one 2 retrogenes
retro_btau_1547, retro_btau_473,
Canis familiaris ENSCAFG00000015081 ortholog_one2one 1 retrogene
retro_cfam_1568,
Callithrix jacchus ENSCJAG00000015849 ortholog_one2one 1 retrogene
retro_cjac_2365,
Echinops telfairi ENSETEG00000009924 ortholog_one2one 2 retrogenes
retro_etel_1076, retro_etel_1275,
Gorilla gorilla ENSGGOG00000013186 ortholog_one2one 2 retrogenes
retro_ggor_1337, retro_ggor_1455,
Microcebus murinus ENSMICG00000017424 ortholog_one2one 1 retrogene
retro_mmur_602,
Myotis lucifugus ENSMLUG00000010933 ortholog_one2one 1 retrogene
retro_mluc_974,
Mustela putorius furo ENSMPUG00000016522 ortholog_one2one 1 retrogene
retro_mputfur_1578,
Mus musculus ENSMUSG00000029622 ortholog_one2one 2 retrogenes
retro_mmus_1340, retro_mmus_3623,
Otolemur garnettii ENSOGAG00000010872 ortholog_one2one 2 retrogenes
retro_ogar_2380, retro_ogar_3087,
Rattus norvegicus ENSRNOG00000000991 ortholog_one2one 2 retrogenes
retro_rnor_1105, retro_rnor_967,
Sus scrofa ENSSSCG00000007609 within_species_paralog 1 retrogene
retro_sscr_387,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_374 62.67 85.88
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Download FASTA sequences of all ENSSSCG00000007625 retrocopies