Parental gene: | STAU1, ENSCJAG00000016233 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 5:43154427..43200681(-) |
>ENSCJAG00000016233
ATGTCTCAAGTTCAAGTGCAAGTTCAGAACCCATCTGCTGCTCTCTCAGGGAGCCAAATACTGAACAAGAACCAGTCTCT
TCTCTCACAGCCTTTGATGAGTATTCCTTCTACTACTAGCTCTCTGCCCTCTGAAAATGCAGGTAGACCCATTCAAAACT
CTGCTTTACCCTCTGCATCTATTACATCCACCAGTGCAGCTGCAGAAAGCATTACCCCTACTGTAGAACTAAATGCACTG
TGCATGAAACTTGGAAAAAAACCAATGTATAAGCCTGTTGACCCTTACTCTCGGATGCAATCCACCTATAACTACAACAT
GAGAGGAGGTGCTTATCCCCCGAGGTACTTTTACCCATTTCCAGTTCCACCTTTACTTTATCAAGTGGAGCTTTCTGTGG
GAGGACAGCAATTTAATGGGAAAGGAAAGACAAGACAGGCTGCGAAACATGATGCTGCTGCCAAAGCATTGAGGATCCTG
CAGAATGAGCCCCCGCCAGAGAGGCTGGAGGTGAATGGAAGAGAATCAGAAGAAGAAAATCTCAATAAATCTGAAATAAG
TCAAGTGTTTGAGATTGCACTTAAACGGAACTTGCCCGTGAATTTTGAGGTGGCCCGGGAGAGTGGCCCACCCCACATGA
AGAACTTTGTGACCAAGGTTTCGGTTGGGGAGTTTGTGGGGGAAGGTGAAGGGAAAAGCAAGAAGATTTCAAAGAAAAAT
GCCGCCATAGCTGTCCTTGAGGAGCTGAAGAAGTTACCGCCCCTGCCTGCAGTTGAACGAGTAAAGCCTAGAATCAAAAA
GAAAACAAAACCTATAGTTAAGCCACAGACAACCCCAGAATATGGCCAAGGGATCAATCCGATTAGCAGACTGGCCCAGA
TCCAGCAGGCAAAAAAGGAGAAGGAGCCAGAGTACATGCTTCTCACAGAGCGAGGCCTTCCGCGCCGCAGGGAGTTCGTG
ATGCAGGTAAAGGTTGGAAACCACACTGCAGAAGGAACAGGCACCAACAAGAAGGTGGCCAAACGCAATGCAGCCGAGAA
CATGCTGGAGATCCTTGGTTTCAAAGTCCCGCAGGCACAGCCCACCAAGCCAGCACTCAAGTCAGAGGAGAAGACACCCA
TAAAGAAACCAGGGGATGGAAGAAAAGTAACCTTTTTTGAACCTGGCTCTGGGGATGAAAATGGGACTAGTAATAAAGAG
GATGAGTTCAGGATGCCTTATCTAAGTCATCAGCAGCTGCCTGCTGGAATTCTTCCCATGGTTCCTGAGGTCGCTCAGGC
TGTAGGAGTTAGTCAAGGACATCACACCAAAGATTTTACCAGGGCAGCTCCGAATCCTGCCAAGGCCACAGTAACTGCCA
TGATAGCCCGAGAGTTGTTGTATGGGGGCACCTCGCCCACAGCCGAGACCATTTTAAAGAATAACATCTCTTCAGGCCAC
GTACCCCATGGACCTCTCACGAGACCCTCTGAGCAACTGGACTATCTTTCCAGAGTCCAGGGATTTCAGGTTGAATACAA
AGACTTCCCCAAAAACAACAAGAACGAATTTGTATCTCTTATCAATTGCTCCTCTCAGCCGCCTCTGATCAGCCATGGTA
TCGGCAAGGATGTGGAGTCCTGCCATGATATGGCTGCACTGAACATCTTAAAGTTGCTGTCTGAGTTGGACCAACAAAGT
ACAGAGATGCCAAGAACAGGAAACGGACCAATGTCTGTGTGTGGGAGGTGCTGA
ATGTCTCAAGTTCAAGTGCAAGTTCAGAACCCATCTGCTGCTCTCTCAGGGAGCCAAATACTGAACAAGAACCAGTCTCT
TCTCTCACAGCCTTTGATGAGTATTCCTTCTACTACTAGCTCTCTGCCCTCTGAAAATGCAGGTAGACCCATTCAAAACT
CTGCTTTACCCTCTGCATCTATTACATCCACCAGTGCAGCTGCAGAAAGCATTACCCCTACTGTAGAACTAAATGCACTG
TGCATGAAACTTGGAAAAAAACCAATGTATAAGCCTGTTGACCCTTACTCTCGGATGCAATCCACCTATAACTACAACAT
GAGAGGAGGTGCTTATCCCCCGAGGTACTTTTACCCATTTCCAGTTCCACCTTTACTTTATCAAGTGGAGCTTTCTGTGG
GAGGACAGCAATTTAATGGGAAAGGAAAGACAAGACAGGCTGCGAAACATGATGCTGCTGCCAAAGCATTGAGGATCCTG
CAGAATGAGCCCCCGCCAGAGAGGCTGGAGGTGAATGGAAGAGAATCAGAAGAAGAAAATCTCAATAAATCTGAAATAAG
TCAAGTGTTTGAGATTGCACTTAAACGGAACTTGCCCGTGAATTTTGAGGTGGCCCGGGAGAGTGGCCCACCCCACATGA
AGAACTTTGTGACCAAGGTTTCGGTTGGGGAGTTTGTGGGGGAAGGTGAAGGGAAAAGCAAGAAGATTTCAAAGAAAAAT
GCCGCCATAGCTGTCCTTGAGGAGCTGAAGAAGTTACCGCCCCTGCCTGCAGTTGAACGAGTAAAGCCTAGAATCAAAAA
GAAAACAAAACCTATAGTTAAGCCACAGACAACCCCAGAATATGGCCAAGGGATCAATCCGATTAGCAGACTGGCCCAGA
TCCAGCAGGCAAAAAAGGAGAAGGAGCCAGAGTACATGCTTCTCACAGAGCGAGGCCTTCCGCGCCGCAGGGAGTTCGTG
ATGCAGGTAAAGGTTGGAAACCACACTGCAGAAGGAACAGGCACCAACAAGAAGGTGGCCAAACGCAATGCAGCCGAGAA
CATGCTGGAGATCCTTGGTTTCAAAGTCCCGCAGGCACAGCCCACCAAGCCAGCACTCAAGTCAGAGGAGAAGACACCCA
TAAAGAAACCAGGGGATGGAAGAAAAGTAACCTTTTTTGAACCTGGCTCTGGGGATGAAAATGGGACTAGTAATAAAGAG
GATGAGTTCAGGATGCCTTATCTAAGTCATCAGCAGCTGCCTGCTGGAATTCTTCCCATGGTTCCTGAGGTCGCTCAGGC
TGTAGGAGTTAGTCAAGGACATCACACCAAAGATTTTACCAGGGCAGCTCCGAATCCTGCCAAGGCCACAGTAACTGCCA
TGATAGCCCGAGAGTTGTTGTATGGGGGCACCTCGCCCACAGCCGAGACCATTTTAAAGAATAACATCTCTTCAGGCCAC
GTACCCCATGGACCTCTCACGAGACCCTCTGAGCAACTGGACTATCTTTCCAGAGTCCAGGGATTTCAGGTTGAATACAA
AGACTTCCCCAAAAACAACAAGAACGAATTTGTATCTCTTATCAATTGCTCCTCTCAGCCGCCTCTGATCAGCCATGGTA
TCGGCAAGGATGTGGAGTCCTGCCATGATATGGCTGCACTGAACATCTTAAAGTTGCTGTCTGAGTTGGACCAACAAAGT
ACAGAGATGCCAAGAACAGGAAACGGACCAATGTCTGTGTGTGGGAGGTGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 33 .47 RPM |
| SRP051959_skeletal_muscle | 28 .83 RPM |
| SRP051959_lymph_node | 25 .84 RPM |
| SRP051959_lung | 41 .64 RPM |
| SRP051959_liver | 34 .87 RPM |
| SRP051959_kidney | 50 .12 RPM |
| SRP051959_heart | 37 .34 RPM |
| SRP051959_colon | 35 .17 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Monodelphis domestica | ENSMODG00000016276 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000027444 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_4102 | 88.76 | 85.96 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000016233 retrocopies