Parental gene: | SEC13, ENSCJAG00000016439 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 15:62223022..62246950(-) |
>ENSCJAG00000016439
ATGAGAGAAGCTGTGCTTACTTGGTGTGTACCTCTTGAACTGCTTTGCAGCCATCCTCTTCCAGTGTCTGCCTTTCTGAA
ACAAGTCAAACTTCATACCTACAGGGCTTGTGCTGGAAAAGATGAAATGGGGAAAATGGTGTCAGTAATTAACACTGTGG
ATACCTCCCATGAGGACATGATTCACGACGCCCAGATGGACTACTATGGCACCCGCCTGGCAACCTGCTCATCAGACAGA
TCTGTCAAAATCTTCGATGTGCGCAATGGAGGGCAGATCCTCATCGCCGACCTCAGGGGTCATGAGGGTCCTGTGTGGCA
AGTGGCCTGGGCTCACCCCATGTACGGCAACATCCTGGCATCGTGCTCCTATGACCGGAAAGTCATTATCTGGAGAGAGG
AAAATGGCACCTGGGAGAAGAGCCACGAGCATGCGGGACACGACTCCTCAGTGAACTCGGTGTGCTGGGCCCCCCATGAC
TACGGCCTGATCCTGGCCTGTGGGAGCTCAGATGGGGCCATTTCCCTGCTGACTTACACCGGGGAAGGCCAATGGGAAGT
AAAGAAGATCAACAATGCTCACACGATTGGCTGCAATGCCGTCAGCTGGGCCCCTGCTGTTGTACCTGGAAGCCTCATAG
ACCAGCCATCGGGGCAGAAACCCAATTACATCAAGAAGTTTGCATCAGGTGGCTGTGACAACCTCATCAAGCTGTGGAAG
GAGGAGGAAGACGGCCAGTGGAAGGAGGAACAAAAGCTGGAAGCGCACAGTGACTGGGTTCGAGACGTGGCCTGGGCCCC
CTCCATCGGCCTGCCCACCAGCACCATCGCCAGCTGCTCCCAGGATGGTCGTGTGTTCATTTGGACCTGTGATGATGCCT
CAGGCAATACGTGGTCCCCCAAATTGCTGCACAAGTTCAACGATGTGGTGTGGCATGTGAGCTGGTCCATCACAGCCAAC
ATCCTGGCCGTCTCCGGTGGAGACAATAAGGAGGAGTTACAGATGCAGCCACAGATTGATCATCTGCCGTAA
ATGAGAGAAGCTGTGCTTACTTGGTGTGTACCTCTTGAACTGCTTTGCAGCCATCCTCTTCCAGTGTCTGCCTTTCTGAA
ACAAGTCAAACTTCATACCTACAGGGCTTGTGCTGGAAAAGATGAAATGGGGAAAATGGTGTCAGTAATTAACACTGTGG
ATACCTCCCATGAGGACATGATTCACGACGCCCAGATGGACTACTATGGCACCCGCCTGGCAACCTGCTCATCAGACAGA
TCTGTCAAAATCTTCGATGTGCGCAATGGAGGGCAGATCCTCATCGCCGACCTCAGGGGTCATGAGGGTCCTGTGTGGCA
AGTGGCCTGGGCTCACCCCATGTACGGCAACATCCTGGCATCGTGCTCCTATGACCGGAAAGTCATTATCTGGAGAGAGG
AAAATGGCACCTGGGAGAAGAGCCACGAGCATGCGGGACACGACTCCTCAGTGAACTCGGTGTGCTGGGCCCCCCATGAC
TACGGCCTGATCCTGGCCTGTGGGAGCTCAGATGGGGCCATTTCCCTGCTGACTTACACCGGGGAAGGCCAATGGGAAGT
AAAGAAGATCAACAATGCTCACACGATTGGCTGCAATGCCGTCAGCTGGGCCCCTGCTGTTGTACCTGGAAGCCTCATAG
ACCAGCCATCGGGGCAGAAACCCAATTACATCAAGAAGTTTGCATCAGGTGGCTGTGACAACCTCATCAAGCTGTGGAAG
GAGGAGGAAGACGGCCAGTGGAAGGAGGAACAAAAGCTGGAAGCGCACAGTGACTGGGTTCGAGACGTGGCCTGGGCCCC
CTCCATCGGCCTGCCCACCAGCACCATCGCCAGCTGCTCCCAGGATGGTCGTGTGTTCATTTGGACCTGTGATGATGCCT
CAGGCAATACGTGGTCCCCCAAATTGCTGCACAAGTTCAACGATGTGGTGTGGCATGTGAGCTGGTCCATCACAGCCAAC
ATCCTGGCCGTCTCCGGTGGAGACAATAAGGAGGAGTTACAGATGCAGCCACAGATTGATCATCTGCCGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 13 .93 RPM |
| SRP051959_skeletal_muscle | 11 .33 RPM |
| SRP051959_lymph_node | 12 .31 RPM |
| SRP051959_lung | 11 .06 RPM |
| SRP051959_liver | 17 .85 RPM |
| SRP051959_kidney | 15 .33 RPM |
| SRP051959_heart | 9 .79 RPM |
| SRP051959_colon | 16 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000005118 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000011245 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000157020 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000002401 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000030298 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000004482 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000017050 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013658 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000014619 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000010628 | ortholog_one2many | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000004395 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_908 | 83.43 | 50.73 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1574 | 75.00 | 62.97 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000016439 retrocopies