Parental gene:

SEC13, ENSG00000157020

Aliases:SEC13, D3S1231E, SEC13L1, SEC13R, npp-20
Description:SEC13 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:10697]
Organism:Human (Homo sapiens)
Coordinates:3:10334814..10362862(-)


>ENSG00000157020
ATGGTGTCAGTAATTAACACTGTGGATACCTCCCATGAGGACATGATTCACGACGCCCAGATGGACTACTATGGCACCCG
CCTGGCAACCTGCTCATCAGACAGGTCCGTCAAAATCTTTGATGTGCGCAATGGAGGGCAGATCCTTATCGCCGACCTCA
GGGGTCATGAGGGTCCTGTGTGGCAAGTGGCCTGGGCTCACCCCATGTACGGCAACATCCTGGCATCGTGCTCCTATGAC
CGGAAAGTCATTATCTGGAGAGAGGAAAACGGCACCTGGGAGAAGAGCCACGAGCATGCGGGACACGACTCCTCAGTGAA
CTCGGTGTGCTGGGCCCCCCATGACTACGGCCTGATCCTGGCCTGTGGGAGCTCGGATGGGGCCATCTCCCTGCTGACTT
ACACCGGGGAAGGCCAATGGGAAGTAAAGAAGATCAACAACGCTCACACCATTGGCTGCAATGCCGTCAGCTGGGCCCCT
GCTGTTGTACCTGGAAGCCTCATAGACCACCCATCGGGGCAGAAACCCAATTACATCAAGAGGTTTGCATCAGGTGGCTG
TGACAACCTCATCAAGCTGTGGAAGGAGGAGGAGGACGGCCAGTGGAAGGAGGAGCAGAAGCTAGAAGCGCACAGTGACT
GGGTTCGAGATGTGGCCTGGGCCCCCTCCATCGGCCTGCCCACCAGCACCATCGCCAGCTGCTCCCAGGATGGTCGTGTG
TTCATTTGGACCTGTGATGATGCCTCAAGCAATACGTGGTCCCCTAAATTGTTGCACAAGTTCAACGATGTGGTGTGGCA
TGTGAGCTGGTCCATCACAGCCAACATCCTGGCTGTCTCTGGTGGAGACAATAAGGTGACCCTGTGGAAGGAGTCAGTTG
ATGGGCAGTGGGTGTGCATCAGTGATGTCAACAAGGGCCAGGGCTCCGTATCAGCATCAGTGACAGAGGGCCAGCAGAAC
GAGCAGTGA

Library Parental gene expression (RPM)
bodymap2_liver 50 .04 RPM
bodymap2_lung 54 .27 RPM
bodymap2_breast 39 .42 RPM
bodymap2_adipose 39 .60 RPM
bodymap2_adrenal 56 .99 RPM
bodymap2_skeletal_muscle 69 .99 RPM
bodymap2_thyroid 44 .84 RPM
bodymap2_prostate 50 .40 RPM
bodymap2_colon 32 .25 RPM
bodymap2_testis 46 .79 RPM
bodymap2_brain 23 .86 RPM
bodymap2_heart 21 .99 RPM
bodymap2_white_blood_cells 44 .77 RPM
bodymap2_lymph_node 60 .80 RPM
bodymap2_ovary 46 .36 RPM
bodymap2_kidney 54 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005118 ortholog_one2one 1 retrogene
retro_cfam_278,
Callithrix jacchus ENSCJAG00000016439 ortholog_one2one 2 retrogenes
retro_cjac_1574, retro_cjac_908,
Felis catus ENSFCAG00000011245 ortholog_one2one 1 retrogene
retro_fcat_541,
Microcebus murinus ENSMICG00000002401 ortholog_one2one 1 retrogene
retro_mmur_1509,
Mus musculus ENSMUSG00000030298 ortholog_one2one 2 retrogenes
retro_mmus_2159, retro_mmus_3443,
Nomascus leucogenys ENSNLEG00000004482 ortholog_one2one 1 retrogene
retro_nleu_642,
Otolemur garnettii ENSOGAG00000017050 ortholog_one2one 1 retrogene
retro_ogar_1655,
Pongo abelii ENSPPYG00000013658 ortholog_one2one 1 retrogene
retro_pabe_2333,
Pan troglodytes ENSPTRG00000014619 ortholog_one2one 1 retrogene
retro_ptro_1774,
Rattus norvegicus ENSRNOG00000010628 ortholog_one2many 2 retrogenes
retro_rnor_1375, retro_rnor_1454,
Tursiops truncatus ENSTTRG00000004395 ortholog_one2one 1 retrogene
retro_ttru_917,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2630 79.02 63.08
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Download FASTA sequences of all ENSG00000157020 retrocopies