RetrogeneDB ID: | retro_cjac_908 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 11:47913424..47913939(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEC13 | ||
Ensembl ID: | ENSCJAG00000016439 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.43 % |
Parental protein coverage: | 50.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE |
..LASC..D.KVIIWRE.NGTWEKSH.HAG.DSSVNSVCWAPHDY.LILACGS..GAISLLTYT.EGQ.. | |
Retrocopy | SVLASC--DQKVIIWREKNGTWEKSHNHAGLDSSVNSVCWAPHDYSLILACGSLAGAISLLTYTVEGQQ* |
Parental | VKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWKEEEDGQWKEEQKLEAH |
VKKINNAHTIG.N..SWAPAVVPGSL.DQP.GQKPNY.KKFASGGCDNLIKLWKEEED.QWKEEQKLEA. | |
Retrocopy | VKKINNAHTIG*NTISWAPAVVPGSLTDQPLGQKPNYMKKFASGGCDNLIKLWKEEEDSQWKEEQKLEAQ |
Parental | SDWVRDVAWAPSIGLPTSTIASCSQDGRVFI-WTC |
S.W..DVAWAPS.GLPTSTI.SCS.DGRVFI.WTC | |
Retrocopy | SAWFQDVAWAPSVGLPTSTIPSCSRDGRVFI<WTC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 16 .00 RPM |
SRP051959_heart | 0 .00 RPM | 9 .79 RPM |
SRP051959_kidney | 0 .00 RPM | 15 .33 RPM |
SRP051959_liver | 0 .00 RPM | 17 .85 RPM |
SRP051959_lung | 0 .00 RPM | 11 .06 RPM |
SRP051959_lymph_node | 0 .00 RPM | 12 .31 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 11 .33 RPM |
SRP051959_spleen | 0 .00 RPM | 13 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005118 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016439 | 2 retrocopies |
retro_cjac_1574, retro_cjac_908 ,
|
Felis catus | ENSFCAG00000011245 | 1 retrocopy | |
Homo sapiens | ENSG00000157020 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002401 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030298 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004482 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000017050 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013658 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014619 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010628 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000004395 | 1 retrocopy |