Parental gene: | COX4I1, ENSCJAG00000017319 |
| Aliases: | None |
| Description: | cytochrome c oxidase subunit IV isoform 1 [Source:HGNC Symbol;Acc:2265] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 20:40200496..40207684(+) |
>ENSCJAG00000017319
ATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCGGTGTGTGTACGAGCACACGGAAGTGT
TGTGAAGAGCGAAGACTATGCACTCCCAAGTTACATGGATCGGCGTGACTATCCCTTGCCCGATGTGGCCCATGTCAGGC
ACCTGTCGGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCTGTGGATGAGAAAGTCGAG
TTGTATCGTATTCAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCCAATGAGTGGAAGACGGTTGTGGGTGCTGC
CATGTTCTTCATCGGCTTCACCGCAATTCTTATCATCTTGGAGAAGCGCTATGTGTACGGCCCCCTCCCGCACACCTTTG
ACAAAGAGTGGGTGGCCATGCAGACCAAGAGGATGCTGGACCTGAAGGTGAACCCCGTCGATGGCCTCGCCTCCAAGTGG
GACTACGACAAGAAGGAGTGGAAGAAGTGA
ATGTTGGCTACCAGGGTATTTAGCCTAGTTGGCAAGCGAGCAATTTCCACCTCGGTGTGTGTACGAGCACACGGAAGTGT
TGTGAAGAGCGAAGACTATGCACTCCCAAGTTACATGGATCGGCGTGACTATCCCTTGCCCGATGTGGCCCATGTCAGGC
ACCTGTCGGCCAGCCAGAAGGCCTTGAAGGAGAAGGAGAAGGCCTCCTGGAGCAGCCTCTCTGTGGATGAGAAAGTCGAG
TTGTATCGTATTCAGTTCAAGGAGAGCTTTGCTGAGATGAACAGGGGCTCCAATGAGTGGAAGACGGTTGTGGGTGCTGC
CATGTTCTTCATCGGCTTCACCGCAATTCTTATCATCTTGGAGAAGCGCTATGTGTACGGCCCCCTCCCGCACACCTTTG
ACAAAGAGTGGGTGGCCATGCAGACCAAGAGGATGCTGGACCTGAAGGTGAACCCCGTCGATGGCCTCGCCTCCAAGTGG
GACTACGACAAGAAGGAGTGGAAGAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 34 .66 RPM |
| SRP051959_skeletal_muscle | 112 .71 RPM |
| SRP051959_lymph_node | 35 .04 RPM |
| SRP051959_lung | 34 .83 RPM |
| SRP051959_liver | 57 .49 RPM |
| SRP051959_kidney | 77 .01 RPM |
| SRP051959_heart | 93 .79 RPM |
| SRP051959_colon | 47 .33 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000005479 | ortholog_one2one | 1 retrogene | |
| Ailuropoda melanoleuca | ENSAMEG00000018274 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000016079 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000019921 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000017207 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000011722 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000007612 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000131143 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000010047 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000014002 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000006763 | ortholog_one2one | 4 retrogenes | |
| Mus musculus | ENSMUSG00000031818 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000011409 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000001735 | ortholog_one2one | 5 retrogenes | |
| Ochotona princeps | ENSOPRG00000002129 | ortholog_one2one | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000007619 | ortholog_one2many | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000008434 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000017817 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000009682 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_802 | 73.96 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2267 | 97.63 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3264 | 75.74 | 99.41 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3300 | 88.69 | 98.22 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000017319 retrocopies