RetrogeneDB ID: | retro_hsap_1428 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:62298581..62299087(-) | ||
Located in intron of: | ENSG00000258882 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000258956 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX4I1 | ||
Ensembl ID: | ENSG00000131143 | ||
Aliases: | COX4I1, COX4, COX4-1, COXIV | ||
Description: | cytochrome c oxidase subunit IV isoform 1 [Source:HGNC Symbol;Acc:2265] |
Percent Identity: | 74.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MLATRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASW |
MLATRV.SLVGKRAIST.V.VRAH..VVKS.D..LPAY.DRRD.P.P.VAHVKHLSA.QKA.K.KEKASW | |
Retrocopy | MLATRVVSLVGKRAISTLVSVRAHGNVVKSDDYALPAYVDRRDYPVPDVAHVKHLSARQKAVKKKEKASW |
Parental | SSLSMDEKVELYRIKFKESFAEMNRGSNEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAK |
S..S.D.KVELY.I.FKESFAEMNRG.NEWKTVVG.AMFF.GFTA..I.W.K..VYGP.P..FDKEWV.. | |
Retrocopy | SNRSTDGKVELYHIQFKESFAEMNRGVNEWKTVVGAAMFFLGFTAFIIIWEKRCVYGPIPHTFDKEWVPM |
Parental | QTKRMLDMK-VNPIQGLASKWDYEKNEWKK |
QTKRMLDM..VNP......KWDY.KNEWKK | |
Retrocopy | QTKRMLDMR<VNPCRASPAKWDYDKNEWKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 101 .97 RPM |
bodymap2_adrenal | 0 .00 RPM | 159 .29 RPM |
bodymap2_brain | 0 .02 RPM | 126 .97 RPM |
bodymap2_breast | 0 .00 RPM | 138 .27 RPM |
bodymap2_colon | 0 .00 RPM | 129 .90 RPM |
bodymap2_heart | 0 .00 RPM | 297 .56 RPM |
bodymap2_kidney | 0 .00 RPM | 145 .14 RPM |
bodymap2_liver | 0 .00 RPM | 106 .10 RPM |
bodymap2_lung | 0 .00 RPM | 131 .58 RPM |
bodymap2_lymph_node | 0 .00 RPM | 125 .58 RPM |
bodymap2_ovary | 0 .00 RPM | 94 .57 RPM |
bodymap2_prostate | 0 .00 RPM | 176 .11 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 128 .21 RPM |
bodymap2_testis | 0 .04 RPM | 83 .75 RPM |
bodymap2_thyroid | 0 .00 RPM | 131 .23 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 152 .52 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_39409 | 510 libraries | 894 libraries | 415 libraries | 10 libraries | 0 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_977 |
Gorilla gorilla | retro_ggor_1101 |
Pongo abelii | retro_pabe_1184 |
Macaca mulatta | retro_mmul_2260 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |