Parental gene:

PPHLN1, ENSCJAG00000017726

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:29039115..29171442(-)


>ENSCJAG00000017726
ATGTGGTCTGAGGGACGATATGAATATGAAAGACTTCCGAGAGAACGAGCATCTCCTCGAAGTCATCCCAGTGATGGCTA
CAATAGACTAGTTAATATTGGGCCAAAGAAACCACCACTGCTAGACAGACCTGGTGAAGGAAGCTACAATAGATATTACA
GTCATGTTGATTACCGAGACTATGACGAGGGCCGCAGTTTTTCTCATGATCGAAGAAGTGGTCCACCTCACAGAGGAGAT
GAATCTGGTTATAGATGGACAAGAGATGATCATTCTGCAAGCAGGCAACCTGAATACAGGGACATGAGAGATGGCTTTAG
AAGAAAAAGTTTCTACTCTTCCCATTATGCAAGAGAACGGTCTCCTCATAAAAGAGACAATGCTTTTTTCAGAGAATCAC
CTGGTGGCCGAAAGGATTCTCCACACAGCAGATCTGGCTCCAGTGTCAGTAGCAGAAGCTACTCTCCAGAAAGGAGCAAA
TCATACTCTTTCCATCAGTCTCAACATAGGAAGTCCGTGCGTCCTGGTGCATCCTACAAACGACAGAATGAAGGAAGTTC
TGAAAGAGACAAAGAGAGGCCTGCCCAGTCTTTGAAAACATCAAGAGATACTTCACCCTCAAGTGCTTCAGCGGCTTCTT
CATCAAAGGTGTTAGACAAACCCAGTAGGCTAACTGAAAAGGAACTTGCTGAGGCTGCAAGCAAGTGGGCTGCTGAAAAG
CTAGAGAAAGCAGATGAAAGTAACTTGCCTGAAATTTCTGAGTATGAGGCAGGATCCACAGCACCATTATTTACTGACCA
GCCAGAGGAACCTGAGTCAAACACAGCAGATGCCATAGAATTATTTGAAGATAGTCAGCTAACCAGTCGCTCTAAAGCAA
TAGCATCAAAAACCAAAGAGATTGAACAGGTTTACCGACAAGACTGTGAAACTTTCGGGATGGTGGTGAAAATGCTGATT
GAAAAAGATCCTTCATTAGAAAAGTCTATACAGTTTGCATTGAGGCAGAATTTACATGAAATAGAGTCTGCAGGACAGAC
TCAGCAGCTGGCGCCCCATGTGATGAATGCTGCAACGGATCATGTCGGAACCCTCAAAAATGAAGGTGAAGAGACTGCAC
AGTCAGTAATGGAGCCTGCTGAGGCAGGAGAATTGCTTGAACCCAGAAGGCGGAGGTTGCACAAACAGTTGCGGCTTCGC
CGGACGGCACAAGCCCCATCTATCACCTGGGGGGTGCTGAAGAAGACGACTCAGGAGGCTGAACAAATCCTGCTCCGGAC
ACAGACACCATGCACTCCAGATAATTTATTCCTTGCTATGCTTTCTGTTATACATTGCAACTCC

Library Parental gene expression (RPM)
SRP051959_spleen 31 .79 RPM
SRP051959_skeletal_muscle 20 .09 RPM
SRP051959_lymph_node 30 .91 RPM
SRP051959_lung 28 .52 RPM
SRP051959_liver 21 .47 RPM
SRP051959_kidney 28 .73 RPM
SRP051959_heart 27 .52 RPM
SRP051959_colon 22 .68 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010693 ortholog_one2one 1 retrogene
retro_chof_1231,
Cavia porcellus ENSCPOG00000012266 ortholog_one2many 2 retrogenes
retro_cpor_744, retro_cpor_745,
Dasypus novemcinctus ENSDNOG00000002007 ortholog_one2one 1 retrogene
retro_dnov_1790,
Equus caballus ENSECAG00000016067 ortholog_one2one 1 retrogene
retro_ecab_209,
Mus musculus ENSMUSG00000036167 ortholog_one2many 3 retrogenes
retro_mmus_1657, retro_mmus_3561, retro_mmus_79,
Otolemur garnettii ENSOGAG00000004012 ortholog_one2many 2 retrogenes
retro_ogar_1387, retro_ogar_2103,
Tarsius syrichta ENSTSYG00000010740 ortholog_one2one 1 retrogene
retro_tsyr_2044,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1547 91.61 78.16
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Download FASTA sequences of all ENSCJAG00000017726 retrocopies