Parental gene:

PPHLN1, ENSDNOG00000002007

Aliases:None
Description:periphilin 1 [Source:HGNC Symbol;Acc:19369]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_6692:8410..134998(+)


>ENSDNOG00000002007
ATGTGGTCTGAGGGAAGATATGACTATGAAAGACTTCCAAGAGAAAGACTGCCTCCTCGGAGTCACCCCAGTGATGGCGT
CCATAGAGTAGTTAATATTGTGCCAAAGAAACCACCACTGCTAGACAGACCTGGTGAAGGAAGCTACAATAGATATAACA
GTCATGTTGATTACCGAGACTATGACGAGGGCCGCAGTTTTTCTCATGATCGAAGAAGTGGGCCACCTCACAGAGGAGAT
GAATCTAGCTATAGATGGCCAAGAGATGATCATTCTGCAAGTCGACAGCCAGAATATAGGGACGTGAGAGATGGCTTTAG
AAGAAAAAGTTTCTATTCTTCCCATTATGCGAGAGATCGATCTCCTCATAAAAGGGACAATTCTTATCTCAGAGAATCAC
CTGTAGGCCGAAAGGATTCTTCACACAGCAGATCTGGCTCCAGTGTCAGCAGCAGAAGCTACTCTCCAGAAAGAAGCAAA
ACATATTCTCATCAATCTCAACATAGAAAGTCCGTGCGTGCCGGTGCATCCTACAAACGGCAGAATGAAGGAAAGCCAGA
AAGAGGTAAAGAGAGACCTTTACAGGCTATGAAAACATCAGGAGATACTTCACCCTCAAGTTCTTCAGCAGTTACTTCAT
CAAAGGTGTTAGACAAGCCCAGTAGGCTAACTGAAAAGGAACTTGCTGAGGCTGCCAGCAAATGGGCTGCTGAAAAGGTA
GAGAAGGGAGATGAAAGCAACTTACCTGAGATTTCTGAGTATGAGGCGGGATCCACAGCACCATTGTTTATTGACCAGCC
AGAAGAACCTGAGTCAAATGCAAAAGATGGCATAGAATTATTTGAAGACAGTCAGCTAACCAGCCGCTCTAAAGCAATAG
CATCAAAAACCAAAGAGATTGAACAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 13 .81 RPM
SRP012922_cerebellum 8 .52 RPM
SRP012922_heart 4 .87 RPM
SRP012922_kidney 4 .38 RPM
SRP012922_liver 5 .57 RPM
SRP012922_lung 11 .30 RPM
SRP012922_quadricep_muscle 3 .98 RPM
SRP012922_spleen 19 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010693 ortholog_one2one 1 retrogene
retro_chof_1231,
Callithrix jacchus ENSCJAG00000017726 ortholog_one2one 1 retrogene
retro_cjac_1547,
Cavia porcellus ENSCPOG00000012266 ortholog_one2many 2 retrogenes
retro_cpor_744, retro_cpor_745,
Equus caballus ENSECAG00000016067 ortholog_one2one 1 retrogene
retro_ecab_209,
Mus musculus ENSMUSG00000036167 ortholog_one2many 3 retrogenes
retro_mmus_1657, retro_mmus_3561, retro_mmus_79,
Otolemur garnettii ENSOGAG00000004012 ortholog_one2many 2 retrogenes
retro_ogar_1387, retro_ogar_2103,
Tarsius syrichta ENSTSYG00000010740 ortholog_one2one 1 retrogene
retro_tsyr_2044,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1790 79.46 73.84
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Download FASTA sequences of all ENSDNOG00000002007 retrocopies