Parental gene:

ENSCPOG00000012266

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_9:57152051..57243308(-)


>ENSCPOG00000012266
AGACCTGGTGAAGGAAGCTACAGTAGATATTACAGTCATGTTGGTTATCGAGACTATGACGAGGGCCGCAGTTTTTCTCA
TGATCGAAGAAGTGGTCCATCTCACAGAGGAGATGAATCTGGCTATCGATGGTCAAGAGACGATCATTCTGCAAGCCGCC
AGAGTGATTACAGGGACATGAGAGATGGCTTTAGACGAAGAAGTTTCTACTCTTCCCATTATACAAGAGACCGGTCTCCT
CATACAAGGGAGCTTCCTTTTTTCCGAGAATCACCTGTAGGCCGAAAGGACTCTCCACACAGCAGATCTGGCTCCAGTGT
CAGTAGCAGAAGCTATTCTCCAGACCGAAGCAAGGCGTACTCTTTCCACCAGTCTCAGCATAGAAAGCCTGCGCGTGCCA
GTGCCTCCTACAAACGGCAGGATGAAGGAAAGCCAGAAAGAGGTAAAGAGCGACCTGTCCCATCTATGAAAACATCAAGA
GATACCTCACCTTCAAGTTCTCCAGCAGGTCCTTCATCAAAGGCATTAGATAAACCCAGCAGGCTGACTGAAAAGGAGCT
TGCTGAGGCTGCAAGCAAGTGGGCTGCGGAAAAGCTCGAGAAGTCTGAGGAGACTAATGTGCCTGGGATTTCTGAGTTCC
AGGTGGGACCTACAACACAGTTATTCATTGAGAATCCAGAGGAGACAGATACCAATGCAACCGACAGCACGGAATTATTT
GAAGACAGTCAGCTCAGCAGTCGCTCGAAAGCAATAGCATTGAAAACCAAAGAGATTGAACAGGTTTATCGACAAGACTG
CGAAACATTTGGGATGGTGGTGAAAATGCTGATTGAAAAAGATCCTTCCTTAGAAAAGTCTATACAATTTGCACTGAGGC
AAAATTTACATGAAATAGGTGAGCGCTGTGTTGAAGAACTCAAGCATTTCATTGCAGAGTATGATACTTCTACTCAAGAT
TTTGGAGAGCCTTTTTAG

Library Parental gene expression (RPM)
SRP017611_brain 10 .99 RPM
SRP017611_kidney 12 .77 RPM
SRP017611_liver 10 .71 RPM
SRP040447_lung 13 .27 RPM
SRP040447_skeletal_muscle 4 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010693 ortholog_one2many 1 retrogene
retro_chof_1231,
Callithrix jacchus ENSCJAG00000017726 ortholog_one2many 1 retrogene
retro_cjac_1547,
Dasypus novemcinctus ENSDNOG00000002007 ortholog_one2many 1 retrogene
retro_dnov_1790,
Equus caballus ENSECAG00000016067 ortholog_one2many 1 retrogene
retro_ecab_209,
Mus musculus ENSMUSG00000036167 ortholog_many2many 3 retrogenes
retro_mmus_1657, retro_mmus_3561, retro_mmus_79,
Otolemur garnettii ENSOGAG00000004012 ortholog_many2many 2 retrogenes
retro_ogar_1387, retro_ogar_2103,
Tarsius syrichta ENSTSYG00000010740 ortholog_one2many 1 retrogene
retro_tsyr_2044,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_744 59.66 53.54
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2. retro_cpor_745 63.89 54.77
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Download FASTA sequences of all ENSCPOG00000012266 retrocopies