Parental gene: | OTX2, ENSCJAG00000018583 |
| Aliases: | None |
| Description: | orthodenticle homeobox 2 [Source:HGNC Symbol;Acc:8522] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:81645524..81649230(-) |
>ENSCJAG00000018583
ATGATGTCTTATCTTAAGCAACCGCCTTATGCAGTCAATGGGCTGAGTCTGACCACTTCGGGTATGGACTTGCTGCACCC
CTCTGTGGGCTACCCGGTTGTTCCCTCCAGGCCCAGGCCTTCCCCTCTGACCTCCAGGGCCTGCTTTAATCCCAAGAAGT
GTGACTTCCTCCAAATTCGGTATGGAGAGCCCCAGATCTTTGAGAGGACTGAAGTGATGGCACCCATACAGAGAGCTCAT
TCAAAAGTTCAGGTATGGTTTAAGAATCGAAGAGCTAAGTGCCGCCAGCAACAACAACAACAGCAGAATGGAGGTCAAAA
CAAAGTGAGACCTGCCAAAAAGAAGACCTCTCCAGCTCGGGAAGTGAGTTCCGAGAGTGGAACAAGTGGCCAATTCACTC
CCCCCTCTAGCACCTCAGTCCCAACCATTGCCAGCAGCAGTGCTCCTGTGTCTATCTGGAGCCCAGCTTCCATCTCCCCA
CTGTCAGATCCCTTGTCCACCTCCTCTTCCTGCATGCAGAGATCCTATCCCATGACCTATACTCAGGCTTCAGGTTATAG
TCAAGGATATGCTGGCTCAACTTCCTACTTTGGGGGCATGGACTGTGGATCTTATTTGACCCCTATGCATCACCAGCTTC
CCGGACCAGGGGCCACACTCAGTCCCATGGGTACCAATGCAGTCACCAGCCATCTCAATCAGTCCCCAGCTTCTCTTTCC
ACCCAGGGATATGGAGCTTCACTTGGGTTTAACTCAACCACCGATTGCTTGTATAAGGACCAAACTGCCTCCTGGAAGCT
TAACTTCCATGCTGACTGCTTGGATTACAAAGATCAGACATCCTCGTGA
ATGATGTCTTATCTTAAGCAACCGCCTTATGCAGTCAATGGGCTGAGTCTGACCACTTCGGGTATGGACTTGCTGCACCC
CTCTGTGGGCTACCCGGTTGTTCCCTCCAGGCCCAGGCCTTCCCCTCTGACCTCCAGGGCCTGCTTTAATCCCAAGAAGT
GTGACTTCCTCCAAATTCGGTATGGAGAGCCCCAGATCTTTGAGAGGACTGAAGTGATGGCACCCATACAGAGAGCTCAT
TCAAAAGTTCAGGTATGGTTTAAGAATCGAAGAGCTAAGTGCCGCCAGCAACAACAACAACAGCAGAATGGAGGTCAAAA
CAAAGTGAGACCTGCCAAAAAGAAGACCTCTCCAGCTCGGGAAGTGAGTTCCGAGAGTGGAACAAGTGGCCAATTCACTC
CCCCCTCTAGCACCTCAGTCCCAACCATTGCCAGCAGCAGTGCTCCTGTGTCTATCTGGAGCCCAGCTTCCATCTCCCCA
CTGTCAGATCCCTTGTCCACCTCCTCTTCCTGCATGCAGAGATCCTATCCCATGACCTATACTCAGGCTTCAGGTTATAG
TCAAGGATATGCTGGCTCAACTTCCTACTTTGGGGGCATGGACTGTGGATCTTATTTGACCCCTATGCATCACCAGCTTC
CCGGACCAGGGGCCACACTCAGTCCCATGGGTACCAATGCAGTCACCAGCCATCTCAATCAGTCCCCAGCTTCTCTTTCC
ACCCAGGGATATGGAGCTTCACTTGGGTTTAACTCAACCACCGATTGCTTGTATAAGGACCAAACTGCCTCCTGGAAGCT
TAACTTCCATGCTGACTGCTTGGATTACAAAGATCAGACATCCTCGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 0 .02 RPM |
| SRP051959_skeletal_muscle | 0 .00 RPM |
| SRP051959_lymph_node | 0 .00 RPM |
| SRP051959_lung | 0 .00 RPM |
| SRP051959_liver | 0 .00 RPM |
| SRP051959_kidney | 0 .00 RPM |
| SRP051959_heart | 0 .00 RPM |
| SRP051959_colon | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000014741 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000009866 | other_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000010981 | other_paralog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000003420 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000005063 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000004650 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1380 | 81.05 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000018583 retrocopies