Parental gene: | TARBP2, ENSCJAG00000018668 |
| Aliases: | None |
| Description: | TAR (HIV-1) RNA binding protein 2 [Source:HGNC Symbol;Acc:11569] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:42389755..42395186(+) |
>ENSCJAG00000018668
ATGAGTGAAGAGGAGCAAGGCTCCGGCACTACCACAGGCTGCGGGCTGCCTAGTATAGAGCAAATGCTGGCCGCCAACCC
AGGCAAGACCCCGATCAGCCTTCTGCAGGAGTATGGGACCAGAATAGGAAAGACGCCTGTGTACGACCTTCTCAAAGCCG
AGGGCCAAGCCCACCAGCCTAATTTCACCTTCCGGGTCACCGTTGGCGACACCAGCTGCACTGGTCAGGGCCCCAGCAAG
AAGGCAGCCAAGCACAAGGCAGCTGAGGTGGCCCTCAAACACCTCAAAGGGGGGAGCATGCTGGAGCCGGCCCTGGAGGA
CAGCAGTTCTTATTCTCCCCTAGACTCTTCACTGCCTGAGGACGTTCCGGTTTTTACTGCTGCAGCAGCTGCTACCCCAG
TTCCATCTGTTGTCCTAACCAGGAGCCCCCCCATGGAAATGCAGCCCCCTGTCTCCCCTCAGCAGTCTGAATGCAACCCT
GTCGGTGCTCTACAGGAGCTGGTGGTGCAGAAAGGCTGGCGGTTGCCGGAGTACACAGTGACCCAGGAGTCGGGGCCAGC
CCACCGGAAAGAATTCACCATGACCTGCCGAGTGGAGCGTTTCATTGAGATTGGAAGTGGTACGTCCAAAAAATTGGCAA
AGCGGAATGCGGCGGCCAAAATGCTGCTTCGAGTGCATACGGTGCCTCTGGATGCCCGGGATGGCAATGAGGTGGAGCCT
GATGATGACCACTTCTCCATTGGTGTGGGCTCCCGCCTGGATGGTCTTCGGAACCGGGGCCCAGGCTGCACCTGGGATTC
TCTACGAAATTCAGTGGGAGAGAAGATCCTGTCCCTCCGAAGTTGCTCCCTGGGCTCTCTGGGTGCCCTAGGCCCTGCCT
GCTGCCGTGTCCTCAGTGAGCTCTCTGAGGAGCAGGCCTTCCATGTCAGCTACCTGGATATTGAGGAGCTGAGCCTGAGT
GGACTCTGCCAGTGCCTGGTGGAACTGTCCACCCAGCCGGCCACTGTATGTCATGGCTCTGCAACCACCAGGGAGGCAGC
CCGTGGTGAGGCTGCCCGCCGTGCCCTGCAGTACCTCAAGATCATGGCGGGCAGCAAGTGA
ATGAGTGAAGAGGAGCAAGGCTCCGGCACTACCACAGGCTGCGGGCTGCCTAGTATAGAGCAAATGCTGGCCGCCAACCC
AGGCAAGACCCCGATCAGCCTTCTGCAGGAGTATGGGACCAGAATAGGAAAGACGCCTGTGTACGACCTTCTCAAAGCCG
AGGGCCAAGCCCACCAGCCTAATTTCACCTTCCGGGTCACCGTTGGCGACACCAGCTGCACTGGTCAGGGCCCCAGCAAG
AAGGCAGCCAAGCACAAGGCAGCTGAGGTGGCCCTCAAACACCTCAAAGGGGGGAGCATGCTGGAGCCGGCCCTGGAGGA
CAGCAGTTCTTATTCTCCCCTAGACTCTTCACTGCCTGAGGACGTTCCGGTTTTTACTGCTGCAGCAGCTGCTACCCCAG
TTCCATCTGTTGTCCTAACCAGGAGCCCCCCCATGGAAATGCAGCCCCCTGTCTCCCCTCAGCAGTCTGAATGCAACCCT
GTCGGTGCTCTACAGGAGCTGGTGGTGCAGAAAGGCTGGCGGTTGCCGGAGTACACAGTGACCCAGGAGTCGGGGCCAGC
CCACCGGAAAGAATTCACCATGACCTGCCGAGTGGAGCGTTTCATTGAGATTGGAAGTGGTACGTCCAAAAAATTGGCAA
AGCGGAATGCGGCGGCCAAAATGCTGCTTCGAGTGCATACGGTGCCTCTGGATGCCCGGGATGGCAATGAGGTGGAGCCT
GATGATGACCACTTCTCCATTGGTGTGGGCTCCCGCCTGGATGGTCTTCGGAACCGGGGCCCAGGCTGCACCTGGGATTC
TCTACGAAATTCAGTGGGAGAGAAGATCCTGTCCCTCCGAAGTTGCTCCCTGGGCTCTCTGGGTGCCCTAGGCCCTGCCT
GCTGCCGTGTCCTCAGTGAGCTCTCTGAGGAGCAGGCCTTCCATGTCAGCTACCTGGATATTGAGGAGCTGAGCCTGAGT
GGACTCTGCCAGTGCCTGGTGGAACTGTCCACCCAGCCGGCCACTGTATGTCATGGCTCTGCAACCACCAGGGAGGCAGC
CCGTGGTGAGGCTGCCCGCCGTGCCCTGCAGTACCTCAAGATCATGGCGGGCAGCAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 6 .01 RPM |
| SRP051959_skeletal_muscle | 7 .45 RPM |
| SRP051959_lymph_node | 6 .44 RPM |
| SRP051959_lung | 6 .56 RPM |
| SRP051959_liver | 9 .96 RPM |
| SRP051959_kidney | 9 .03 RPM |
| SRP051959_heart | 5 .37 RPM |
| SRP051959_colon | 6 .35 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000139546 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000012637 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000023051 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017690 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004583 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005020 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1526 | 74.78 | 60.93 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000018668 retrocopies