Parental gene: | TARBP2, ENSG00000139546 |
| Aliases: | TARBP2, LOQS, TRBP, TRBP1, TRBP2 |
| Description: | TAR (HIV-1) RNA binding protein 2 [Source:HGNC Symbol;Acc:11569] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 12:53894704..53900215(+) |
>ENSG00000139546
ATGAGTGAAGAGGAGCAAGGCTCCGGCACTACCACGGGCTGCGGGCTGCCTAGTATAGAGCAAATGCTGGCCGCCAACCC
AGGCAAGACCCCGATCAGCCTTCTGCAGGAGTATGGGACCAGAATAGGGAAGACGCCTGTGTACGACCTTCTCAAAGCCG
AGGGCCAAGCCCACCAGCCTAATTTCACCTTCCGGGTCACCGTTGGCGACACCAGCTGCACTGGTCAGGGCCCCAGCAAG
AAGGCAGCCAAGCACAAGGCAGCTGAGGTGGCCCTCAAACACCTCAAAGGGGGGAGCATGCTGGAGCCGGCCCTGGAGGA
CAGCAGTTCTTTTTCTCCCCTAGACTCTTCACTGCCTGAGGACATTCCGGTTTTTACTGCTGCAGCAGCTGCTACCCCAG
TTCCATCTGTAGTCCTAACCAGGAGCCCCCCCATGGAACTGCAGCCCCCTGTCTCCCCTCAGCAGTCTGAGTGCAACCCC
GTTGGTGCTCTGCAGGAGCTGGTGGTGCAGAAAGGCTGGCGGTTGCCGGAGTACACAGTGACCCAGGAGTCTGGGCCAGC
CCACCGCAAAGAATTCACCATGACCTGTCGAGTGGAGCGTTTCATTGAGATTGGGAGTGGCACTTCCAAAAAATTGGCAA
AGCGGAATGCGGCGGCCAAAATGCTGCTTCGAGTGCACACGGTGCCTCTGGATGCCCGGGATGGCAATGAGGTGGAGCCT
GATGATGACCACTTCTCCATTGGTGTGGGCTCCCGCCTGGATGGTCTTCGAAACCGGGGCCCAGGTTGCACCTGGGATTC
TCTACGAAATTCAGTAGGAGAGAAGATCCTGTCCCTCCGCAGTTGCTCCCTGGGCTCCCTGGGTGCCCTGGGCCCTGCCT
GCTGCCGTGTCCTCAGTGAGCTCTCTGAGGAGCAGGCCTTTCACGTCAGCTACCTGGATATTGAGGAGCTGAGCCTGAGT
GGACTCTGCCAGTGCCTGGTGGAACTGTCCACCCAGCCGGCCACTGTGTGTCATGGCTCTGCAACCACCAGGGAGGCAGC
CCGTGGTGAGGCTGCCCGCCGTGCCCTGCAGTACCTCAAGATCATGGCAGGCAGCAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_adipose | 3 .70 RPM |
| bodymap2_adrenal | 12 .26 RPM |
| bodymap2_brain | 3 .70 RPM |
| bodymap2_breast | 7 .30 RPM |
| bodymap2_colon | 4 .72 RPM |
| bodymap2_heart | 2 .62 RPM |
| bodymap2_kidney | 13 .83 RPM |
| bodymap2_liver | 8 .77 RPM |
| bodymap2_lung | 4 .34 RPM |
| bodymap2_lymph_node | 14 .87 RPM |
| bodymap2_ovary | 9 .39 RPM |
| bodymap2_prostate | 11 .05 RPM |
| bodymap2_skeletal_muscle | 2 .18 RPM |
| bodymap2_testis | 12 .44 RPM |
| bodymap2_thyroid | 11 .28 RPM |
| bodymap2_white_blood_cells | 7 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000018668 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000012637 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000023051 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017690 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004583 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005020 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_3995 | 78.15 | 81.97 | Please wait, loading  |
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Download FASTA sequences of all ENSG00000139546 retrocopies