Parental gene: | CSRP2, ENSCJAG00000019153 |
| Aliases: | None |
| Description: | cysteine and glycine-rich protein 2 [Source:HGNC Symbol;Acc:2470] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 9:66551608..66569916(-) |
>ENSCJAG00000019153
ATGCCTGTCTGGGGCGGTGGAAACAAGTGTGGGGCCTGCGGGAGGACCGTGTACCACGCAGAAGAGGTGCAGTGTGATGG
CAGGAGCTTCCACCGCTGCTGCTTTCTCTGCATGGTTTGCAGGAAAAATTTAGATAGCACAACAGTGGCAATTCACGATG
AAGAGATCTACTGCAAATCCTGCTATGGAAAGAAGTATGGGCCAAAAGGCTACGGTTACGGCCAGGGCGCTGGCACGCTT
AACATGGACCGTGGCGAGAGGCTCGGCATCAAACCAGAGAGTGTTCAGCCTCACAGGCCTACAACAAATCCAAACACTTC
TAAATTTGCTCAGAAATATGGAGGTGCTGAGAAGTGTTCCAGATGTGGGGATTCTGTATATGCTGCTGAGAAGATCATTG
GAGCTGGAAAGCCCTGGCACAAAAACTGTTTCCGATGTGCAAAGTGTGGGAAGAGTCTTGAATCAACAACTCTAACTGAA
AAAGAAGGTGAAATCTATTGTAAAGGATGCTATGCAAAGAACTTTGGGCCCAAGGGATTTGGCTATGGCCAAGGAGCAGG
GGCTCTTGTCCATGCCCAGTAA
ATGCCTGTCTGGGGCGGTGGAAACAAGTGTGGGGCCTGCGGGAGGACCGTGTACCACGCAGAAGAGGTGCAGTGTGATGG
CAGGAGCTTCCACCGCTGCTGCTTTCTCTGCATGGTTTGCAGGAAAAATTTAGATAGCACAACAGTGGCAATTCACGATG
AAGAGATCTACTGCAAATCCTGCTATGGAAAGAAGTATGGGCCAAAAGGCTACGGTTACGGCCAGGGCGCTGGCACGCTT
AACATGGACCGTGGCGAGAGGCTCGGCATCAAACCAGAGAGTGTTCAGCCTCACAGGCCTACAACAAATCCAAACACTTC
TAAATTTGCTCAGAAATATGGAGGTGCTGAGAAGTGTTCCAGATGTGGGGATTCTGTATATGCTGCTGAGAAGATCATTG
GAGCTGGAAAGCCCTGGCACAAAAACTGTTTCCGATGTGCAAAGTGTGGGAAGAGTCTTGAATCAACAACTCTAACTGAA
AAAGAAGGTGAAATCTATTGTAAAGGATGCTATGCAAAGAACTTTGGGCCCAAGGGATTTGGCTATGGCCAAGGAGCAGG
GGCTCTTGTCCATGCCCAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 2 .92 RPM |
| SRP051959_skeletal_muscle | 2 .27 RPM |
| SRP051959_lymph_node | 3 .33 RPM |
| SRP051959_lung | 7 .58 RPM |
| SRP051959_liver | 2 .34 RPM |
| SRP051959_kidney | 18 .66 RPM |
| SRP051959_heart | 9 .93 RPM |
| SRP051959_colon | 2 .24 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000019788 | within_species_paralog | 1 retrogene | |
| Equus caballus | ENSECAG00000015606 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000019648 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000175183 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000026601 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000002384 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000018257 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000017469 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004885 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000008330 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000013999 | ortholog_one2one | 6 retrogenes | |
| Ochotona princeps | ENSOPRG00000011987 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000004790 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000003772 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000002290 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000010876 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000009767 | ortholog_one2one | 3 retrogenes | |
| Tursiops truncatus | ENSTTRG00000014596 | ortholog_one2one | 1 retrogene | |
| Drosophila melanogaster | FBgn0259209 | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1266 | 95.34 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1285 | 88.78 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1384 | 96.88 | 82.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_1555 | 75.36 | 70.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_2919 | 88.12 | 52.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_cjac_3150 | 86.29 | 90.16 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000019153 retrocopies