Parental gene:

PTBP1, ENSCJAG00000020162

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:509784..522885(+)


>ENSCJAG00000020162
ATGGACGGCATTGTCCCAGATATAGCAGTTGGTACAAAGCGGGGATCTGACGAGCTTTTCTCTACTTGTGTCACCAACGG
ACCGTTTATCATGAGCAGCAACTCAGCGTCTGCAGCAAATGGAAATGACAGCAAGAAGTTCAAAGGCGACAGCAGAAGTG
CCGGTGTCCCCTCCAGAGTGATCCACATTCGGAAGCTCCCCATCGACGTCACCGAAGGGGAGGTCATTTCCCTGGGGCTG
CCCTTCGGGAAGGTCACCAATCTCCTGATGTTGAAGGGGAAAAACCAGGCCTTCATCGAGATGAACACGGAGGAGACCGC
CAACACCATGGTGAACTACTACACCTCCGTGACACCAGTGCTGCGCGGCCAGCCCATCTACATCCAGTTCTCCAACCACA
AGGAGCTGAAGACCGACAGCTCTCCCAACCAGGCGCGCGCCCAGGCTGCCCTGCAGGCCGTGAACTCGGTCCAGTCGGGG
AACCTGGCCTTGGCTGCCTCGGCGGCGGCCGTGGATGCAGGGATGGTGATGGCCGGGCAGAGCCCCGTGCTGAGGATCAT
CGTGGAGAACCTCTTCTACCCGGTGACCCTGGACGTGCTGCACCAGATCTTCTCCAAGTTCGGCACGGTGTTGAAGATAA
TCACCTTCACCAAGAACAACCAGTTCCAGGCCCTGCTGCAGTACGCCGACCCTGTGAGCGCCCAGCACGCCAAGCTGTCT
CTGGACGGGCAGAACATCTACAACGCCTGCTGCACGCTGCGCATCGACTTCTCCAAGCTCACCAGCCTCAACGTCAAGTA
CAACAACGACAAGAGCCGTGACTACACGCGCCCAGACCTGCCCTCCGGGGACAGCCAGCCCTCGCTGGACCAGACCATGG
CCGCGGCCTTCGGTGCACCTGGTATAATCTCAGCCTCTCCGTATGCAGGAGCTGGTTTCCCTCCCACCTTTGCCATTCCT
CAAGCTGCAGGCCTCTCGGTTCCCAACGTCCACGGAGCCCTGGCCCCCCTGGCCATCCCCTCGGCGGCGGCGGCAGCTGC
GGCGGCAGGCCGGATCGCCATTCCGGGCCTGGCTGGGGCAGGAAATTCTGTGTTGCTGGTCAGCAACCTCAACCCAGAGA
GAGTCACACCCCAAAGCCTCTTTATTCTTTTCGGCGTCTACGGCGACGTGCAGCGCGTCAAGATCCTGTTCAATAAGAAG
GAGAATGCCTTGGTGCAGATGGCGGATGGCAACCAGGCCCAGCTGGCCATGAGCCACCTGAACGGGCACAAGCTGCACGG
GAAGCCCATCCGCATCACGCTCTCGAAGCACCAGAACGTGCAGCTTCCCCGCGAGGGCCAGGAGGACCAGGGCCTGACCA
AGGACTATGGCAACTCGCCCCTGCACCGCTTCAAGAAGCCAGGTTCCAAGAACTTCCAGAACATATTCCCGCCCTCGGCC
ACCCTGCACCTCTCCAACATCCCGCCCTCAGTGTCGGAGGAAGATCTCAAGGTCCTCTTCTCCAGCAACGGGGGCGTCGT
CAAAGGGTTCAAATTCTTCCAGAAGGACCGCAAGATGGCGCTGATCCAGATGGGCTCCGTGGAGGAGGCGGTCCAGGCCC
TCATTGACCTGCACAACCACGACCTCGGGGAGAGCCACCACCTGCGGGTCTCCTTCTCCAAGTCCACCATCTAG

Library Parental gene expression (RPM)
SRP051959_colon 22 .39 RPM
SRP051959_heart 13 .38 RPM
SRP051959_kidney 24 .54 RPM
SRP051959_liver 13 .91 RPM
SRP051959_lung 23 .51 RPM
SRP051959_lymph_node 21 .30 RPM
SRP051959_skeletal_muscle 6 .60 RPM
SRP051959_spleen 19 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona savignyi ENSCSAVG00000007421 ortholog_one2many 1 retrogene
retro_csav_17,
Dasypus novemcinctus ENSDNOG00000000882 possible_ortholog 1 retrogene
retro_dnov_982,
Equus caballus ENSECAG00000018845 ortholog_one2one 1 retrogene
retro_ecab_330,
Echinops telfairi ENSETEG00000006890 ortholog_many2many 1 retrogene
retro_etel_1573,
Homo sapiens ENSG00000011304 ortholog_one2one 1 retrogene
retro_hsap_1354,
Gorilla gorilla ENSGGOG00000005090 ortholog_one2one 1 retrogene
retro_ggor_1054,
Macropus eugenii ENSMEUG00000006710 ortholog_one2many 2 retrogenes
retro_meug_1447, retro_meug_67,
Myotis lucifugus ENSMLUG00000003320 ortholog_one2one 1 retrogene
retro_mluc_755,
Nomascus leucogenys ENSNLEG00000000864 ortholog_one2one 1 retrogene
retro_nleu_1834,
Pongo abelii ENSPPYG00000009289 ortholog_one2one 1 retrogene
retro_pabe_1122,
Pan troglodytes ENSPTRG00000010165 ortholog_one2one 1 retrogene
retro_ptro_928,
Rattus norvegicus ENSRNOG00000010448 possible_ortholog 2 retrogenes
retro_rnor_1994, retro_rnor_2478,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1901 84.74 58.44
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Download FASTA sequences of all ENSCJAG00000020162 retrocopies