Parental gene:

PTBP1, ENSDNOG00000000882

Aliases:None
Description:polypyrimidine tract binding protein 1 [Source:HGNC Symbol;Acc:9583]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_128:3..188354(+)


>ENSDNOG00000000882
GCCTGCGTCACTAACGGACCTTTTATCATGAGCAGCAGCTCGGCCTCCGCAGCCAACGGGAACGACAGCAAGAAGTTCAA
AGGGGACAGCAGGAGCGCGGGCGTGCCCTCCAGGGTGATCCACGTGCGGAAGCTCCCGGGCGACGTCACCGAGGGCGAGG
TCATCTCCCTGGGGCTGCCTTTCGGGAAGGTCACCAACCTGCTGATGCTGAAAGGGAAGAACCAGGCCTTCATCGAGATG
AACACGGAGGAGGCCGCCAACACGCTGGTCAACTACTACACCTCGGTGACGCCCGTGCTGCGCGGCCAGCCCGTCTACAT
CCAGTTCTCCAACCACAAGGAGCTCAAGACGGACAGCTCGCCCAACCAGGCGCGGGCCCAGGCGGCCCTGCAGGCTGTCA
ACTCCGTGCAGTCGGGGAACCTGGCGCTGGCCGCCTCGACCGCCGCTGTGGACGCGGGGATGGCCATGGCTGGACAGAGC
CCCGTGTTGCGCATCATCGTGGAGAACCTCTTCTACCCCGTGACGCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTCGCTGGACGGGCAGAATATCTCCAACGCCTGCGGCAAGCTGATCGACTTCTCCAATCTCACCAGC
CTCAAGAACAACGACAAGAACCGGAACTACACGCACCCAGACCTGCCCTGCGGAGACAGGCAGCCCTCCCTGGACCAGAC
CGTGGCCTCCGCCTTCGGTGCACCTGGCATAACCTCAGCCTCCCCACACGCAGGAGCTGGCTTCCCTCCCACCTTTGCCC
CTCAAGCCGCAGGCCTCTCCGTTCCCAGCATCCACGGAGCACGGGCCCTCCTGGCCCTCCTGGTGGCAGCAGCGGCGGCA
GGGCAGATAGCCATCCTGGCCGGGGCTGGGAATCCGGTCCTGCTCATCAGCAACCTCCACCCTAGAGTCACACCCCAAAG
CCTCTTTATTCTTTTCGGCGTCTACGGCGACGTGCAGCGGGTGAAGGTGTTGTTCAACAAGAAGGAGAATGCCCTGGTGC
AGATGGCAGACGGCAGCCAGGCGCAGCTGGCCATGAGCCACCTCAATGGGCACAAGCTGCATGGGAAGCCGCTGCGCATC
ACGCTGTCCAAGCACCAGAGCGTGCAGCTGCCCCGCGAGGGCCAGGAGGATGGGAAGCCGCCCAAGAACTCCGGCAGCTC
GCCCCTGCACCGCTTCAAGAAGCCGGGCTCCAAGAACTTCCAGAACATCTTCCCGCCCTCCGCCACCCTGCACCTCTCCA
ACGTGCCGCCTTCGGTGTCTGAGGAGGACCTCAAGATGCTCTTCTCCAGCAACGGGGGCATCGTCAAGGGCTTCAAGTTC
TTCCAGAAGGACCGCAAGATGGCGCTGATCCAGATGGGCTCGGTGGAGGAGGCCATCCAGGCGCTCATCGACCTGCACAA
CCACGACCTGGGCGAGAGCCACCACCTGCGCGTCTCCTTCTCCAAGTCCACCATCTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 128 .15 RPM
SRP012922_cerebellum 32 .44 RPM
SRP012922_heart 10 .44 RPM
SRP012922_kidney 38 .06 RPM
SRP012922_liver 41 .02 RPM
SRP012922_lung 90 .11 RPM
SRP012922_quadricep_muscle 7 .62 RPM
SRP012922_spleen 116 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000020162 possible_ortholog 1 retrogene
retro_cjac_1901,
Ciona savignyi ENSCSAVG00000007421 ortholog_one2many 1 retrogene
retro_csav_17,
Echinops telfairi ENSETEG00000006890 ortholog_one2many 1 retrogene
retro_etel_1573,
Macropus eugenii ENSMEUG00000006710 ortholog_one2one 2 retrogenes
retro_meug_1447, retro_meug_67,
Myotis lucifugus ENSMLUG00000003320 possible_ortholog 1 retrogene
retro_mluc_755,
Rattus norvegicus ENSRNOG00000010448 possible_ortholog 2 retrogenes
retro_rnor_1994, retro_rnor_2478,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_982 84.91 58.48
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Download FASTA sequences of all ENSDNOG00000000882 retrocopies