Parental gene:

ASS1, ENSCJAG00000020554

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:174548599..174623722(+)


>ENSCJAG00000020554
ATGTCCAGCAAAGGCTCTGTGGTTCTGGCCTACAGCGGTGGCCTGGACACTTCCTGCATCCTTGTGTGGCTGAAGGAACA
AGGCTATGACGTCATTGCCTACCTGGCCAACATTGGCCAGAAGGAAGACTTCGAGGAAGCCAGGAAGAAGGCACTGAAGC
TTGGGGCCAAAAAGGTGTTCATTGAGGATGTCAGCAGGGAATTTGTGGAGGAGTTCATCTGGCCAGCCATCCAGTCCAGT
GCACTATATGAGGACCGCTACCTCCTGGGCACCTCTCTCGCCAGGCCCTGCATTGCCCGCAAACAAGTGGAAATCGCTCA
GCGAGAGGGGGCCAAGTATGTGTCCCACGGTGCCACAGGAAAGGGGAACGATCAGGTTCGGTTTGAGCTCACCTGCTATT
CGCTGGCCCCCCAGATAAAGGTCATTGCTCCCTGGAGGATGCCTGAGTTCTACAACCGGTTCAAGGGCCGCAACGACCTG
ATGGAATACGCAAAGCAACATGGGATTCCTATCCCGGTCACGCCCAAGAATCCGTGGAGCATGGATGAGAACCTCATGCA
TATCAGCTACGAGGCCGGAATCCTGGAGAACCCCAAGAACCAAGCGCCTCCAGGTCTCTACACAAAGACCCAGGACCCGG
CCAAAGCCCCCAACACCCCTGACATTCTTGAGATCGAGTTCAAAAAAGGGGTCCCCGTGAAGGTGACCAACGTCAAGGAT
GGCACCACCCACCAGACCTCCTTGGAGCTCTTCATGTACCTGAACGAAGTCGCGGGCAAGCACGGTGTGGGACGAATTGA
CATCGTGGAGAACCGCTTCATCGGAATGAAGTCCCGAGGTATCTACGAGACCCCAGCAGGCACCATCCTTTACCACGCTC
ATTTAGACATCGAGGCTTTCACCATGGACCGGGAAGTGCGCAAAATCAAACAAGGCCTGGGCTTGAAATTCGCCGAGCTG
GTCTATACTGGTTTCTGGCACAGCCCTGAGTGTGAATTTGTCCGCCACTGCATCGCCAAGTCCCAGGAGCGAGTGGAAGG
GAAAGTGCAGGTGTCCGTCTTGAAGGGCCAGGTGTACATCCTCGGCCGGGAGTCCCCACTGTCTCTCTACAACGAGGAGC
TGGTGAGCATGAACGTTCAGGGTGACTATGAGCCAATTGATGCCACCGGCTTCATCAACATCAATTCCCTCAGGCTGAAG
GAATATCATCGTCTCCAGAGCAAGGTCACTGCCAAATAG

Library Parental gene expression (RPM)
SRP051959_colon 51 .56 RPM
SRP051959_heart 15 .54 RPM
SRP051959_kidney 351 .05 RPM
SRP051959_liver 707 .59 RPM
SRP051959_lung 14 .62 RPM
SRP051959_lymph_node 4 .82 RPM
SRP051959_skeletal_muscle 2 .01 RPM
SRP051959_spleen 10 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000130707 possible_ortholog 14 retrogenes
retro_hsap_2247, retro_hsap_2885, retro_hsap_3109, retro_hsap_3175, retro_hsap_3252, retro_hsap_3564, retro_hsap_3824, retro_hsap_4149, retro_hsap_4182, retro_hsap_4648, retro_hsap_4743, retro_hsap_4934, retro_hsap_820, retro_hsap_985,
Gorilla gorilla ENSGGOG00000010228 possible_ortholog 8 retrogenes
retro_ggor_1346, retro_ggor_1675, retro_ggor_2134, retro_ggor_2403, retro_ggor_2574, retro_ggor_2787, retro_ggor_671, retro_ggor_787,
Myotis lucifugus ENSMLUG00000006066 ortholog_one2many 2 retrogenes
retro_mluc_1058, retro_mluc_1304,
Mus musculus ENSMUSG00000076441 ortholog_many2many 1 retrogene
retro_mmus_135,
Nomascus leucogenys ENSNLEG00000012500 possible_ortholog 13 retrogenes
retro_nleu_1088, retro_nleu_1245, retro_nleu_1317, retro_nleu_1381, retro_nleu_1390, retro_nleu_1424, retro_nleu_1701, retro_nleu_1792, retro_nleu_220, retro_nleu_253, retro_nleu_2680, retro_nleu_2764, retro_nleu_625,
Pongo abelii ENSPPYG00000019692 possible_ortholog 13 retrogenes
retro_pabe_1963, retro_pabe_2390, retro_pabe_2637, retro_pabe_2696, retro_pabe_2937, retro_pabe_3069, retro_pabe_3197, retro_pabe_3422, retro_pabe_3460, retro_pabe_3521, retro_pabe_3522, retro_pabe_731, retro_pabe_834,
Pan troglodytes ENSPTRG00000021473 possible_ortholog 14 retrogenes
retro_ptro_1590, retro_ptro_1951, retro_ptro_2101, retro_ptro_2199, retro_ptro_2268, retro_ptro_2421, retro_ptro_2602, retro_ptro_2821, retro_ptro_2836, retro_ptro_3064, retro_ptro_3158, retro_ptro_3298, retro_ptro_571, retro_ptro_762,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1219 77.54 100.00
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2. retro_cjac_4038 75.12 51.21
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3. retro_cjac_4209 79.61 100.00
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Download FASTA sequences of all ENSCJAG00000020554 retrocopies