Parental gene:

PSMB1, ENSCJAG00000020644

Aliases:None
Description:proteasome (prosome, macropain) subunit, beta type, 1 [Source:HGNC Symbol;Acc:9537]
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:171559806..171579000(-)


>ENSCJAG00000020644
ATGTTGTCCTCTACAGCCATGTATTCGGGTCCTGGCAGAGAGCTGGGAATGGAGCCGCACAGAGCTGCGGGACCTCTGCA
GCTACGATTTTCGCCCTACGCTTTCAACGGAGGTACTGTACTGGCAATTGCTGGAGAAGATTTTTCGATCGTTGCTTCGG
ATACTCGATTGAGTGAAGGGTTTTCAATTCATACCCGGGATAGCCCCAAATGTTACAAATTAACAGACAAAACAGTCATT
GGATGCAGCGGTTTTCATGGAGACTGTCTTACCCTGACAAAGATTATTGAAGCAAGACTAAAGATGTATAAGCATTCCAA
TAATAAGGCCATGACTACGGGGGCAATTGCTGCAATGCTGTCTACGATCCTGTATTCAAGGCGCTTCTTTCCGTACTATG
TTTACAACATCATTGGTGGACTTGATGAAGAAGGAAAGGGGGCTGTATACAGCTTTGACCCAGTAGGGTCTTACCAGAGA
GACTCCTTCAAGGCTGGAGGCTCAGCAAGTGCCATGCTACAGCCCCTGCTTGACAACCAGGTTGGTTTTAAGAACATGCA
GAATGTGGAGCATGTCCCACTGTCCTTGGACAGAGCCATGCGGCTGGTGAAAGATGTCTTCATTTCTGCGGCTGAGAGAG
ACGTGTACACTGGGGATGCACTCCGGATCTGCATAGTGACCAAAGAGGGCATCAGGGAGGAGACTCTTCCCTTAAGGAAG
GACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 29 .81 RPM
SRP051959_skeletal_muscle 24 .24 RPM
SRP051959_lymph_node 26 .85 RPM
SRP051959_lung 23 .78 RPM
SRP051959_liver 35 .72 RPM
SRP051959_kidney 30 .75 RPM
SRP051959_heart 25 .06 RPM
SRP051959_colon 29 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017047 ortholog_one2one 1 retrogene
retro_amel_1066,
Canis familiaris ENSCAFG00000004116 ortholog_one2one 1 retrogene
retro_cfam_2108,
Dasypus novemcinctus ENSDNOG00000019502 ortholog_one2one 1 retrogene
retro_dnov_2087,
Felis catus ENSFCAG00000031269 ortholog_one2one 1 retrogene
retro_fcat_911,
Gorilla gorilla ENSGGOG00000022128 ortholog_one2one 1 retrogene
retro_ggor_1661,
Microcebus murinus ENSMICG00000007469 ortholog_one2one 1 retrogene
retro_mmur_173,
Macaca mulatta ENSMMUG00000019919 ortholog_one2one 1 retrogene
retro_mmul_1135,
Mustela putorius furo ENSMPUG00000007150 ortholog_one2one 1 retrogene
retro_mputfur_1196,
Mus musculus ENSMUSG00000014769 ortholog_one2one 2 retrogenes
retro_mmus_1784, retro_mmus_3664,
Oryctolagus cuniculus ENSOCUG00000007973 ortholog_one2one 2 retrogenes
retro_ocun_1029, retro_ocun_620,
Procavia capensis ENSPCAG00000000344 ortholog_one2one 1 retrogene
retro_pcap_329,
Pongo abelii ENSPPYG00000017191 ortholog_one2many 1 retrogene
retro_pabe_130,
Vicugna pacos ENSVPAG00000006517 ortholog_one2one 1 retrogene
retro_vpac_521,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_632 67.97 63.59
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Download FASTA sequences of all ENSCJAG00000020644 retrocopies