Parental gene:

CHP1, ENSCJAG00000020761

Aliases:None
Description:calcineurin-like EF-hand protein 1 [Source:HGNC Symbol;Acc:17433]
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:34617912..34668463(-)


>ENSCJAG00000020761
ATGGGTTCTCGGGCCTCCACGTTACTGAGGGACGAAGAGCTCGAGGAGATCAAGAAGGAGACTGGCTTTCCCCACAGGAA
AATCACTCGCCTTTACAGCCGGTTCACCAGCCTGGACAAAGGAGAGAACGGGACTCTCAGCCGGGAAGATTTCCAGAGGA
TTCCAGAACTTGCCATCAACCCACTGGGGGACCGGATCATCAATGCCTTCTTTCCAGAGGGAGAGGACCAAGTAAACTTC
CGTGGATTCATGCGAACTCTGGCTCATTTCCGCCCCATTGAGGATAATGAAAAGAGCAAAGATGTGAATGGACCCGAACC
ACTCAACAGCCGGAGCAACAAACTGCACTTTGCTTTTCGATTATATGATTTGGATAAAGACGACAAGATCTCCCGTGATG
AGCTGTTACAGGTGCTACGCATGATGGTCGGAGTAAATATCTCAGATGAGCAGCTGGGCAGCATCGCAGACAGGACCATT
CAGGAGGCTGATCAGGATGGGGACAGTGCCATATCTTTCACAGAATTTGTTAAGGTTTTGGAGAAGGTGGATGTAGAACA
GAAAATGAGCATCCGATTTCTTCACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 7 .06 RPM
SRP051959_skeletal_muscle 7 .64 RPM
SRP051959_lymph_node 6 .03 RPM
SRP051959_lung 13 .70 RPM
SRP051959_liver 85 .19 RPM
SRP051959_kidney 31 .75 RPM
SRP051959_heart 7 .93 RPM
SRP051959_colon 23 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000027173 ortholog_one2one 1 retrogene
retro_btau_1785,
Callithrix jacchus ENSCJAG00000006498 within_species_paralog 1 retrogene
retro_cjac_624,
Equus caballus ENSECAG00000019751 ortholog_one2one 1 retrogene
retro_ecab_1099,
Felis catus ENSFCAG00000006346 ortholog_one2one 1 retrogene
retro_fcat_1964,
Gorilla gorilla ENSGGOG00000007312 ortholog_one2one 2 retrogenes
retro_ggor_1293, retro_ggor_2392,
Loxodonta africana ENSLAFG00000014743 ortholog_one2one 3 retrogenes
retro_lafr_221, retro_lafr_795, retro_lafr_838,
Oryctolagus cuniculus ENSOCUG00000013832 ortholog_one2one 1 retrogene
retro_ocun_68,
Otolemur garnettii ENSOGAG00000013099 ortholog_one2one 2 retrogenes
retro_ogar_2442, retro_ogar_628,
Procavia capensis ENSPCAG00000005419 ortholog_one2one 1 retrogene
retro_pcap_240,
Pongo abelii ENSPPYG00000006370 ortholog_one2one 2 retrogenes
retro_pabe_2749, retro_pabe_2925,
Pteropus vampyrus ENSPVAG00000003150 ortholog_one2one 1 retrogene
retro_pvam_1207,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2396 68.46 65.64
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Download FASTA sequences of all ENSCJAG00000020761 retrocopies