Parental gene:

CMPK1, ENSCJAG00000021250

Aliases:None
Description:cytidine monophosphate (UMP-CMP) kinase 1, cytosolic [Source:HGNC Symbol;Acc:18170]
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:82237544..82273632(+)


>ENSCJAG00000021250
ATGAAGCCACTGGTCGTGTTCGTCCTCGGCGGCCCCGGCGCCGGCAAGGGGACACAGTGCGCCCGCATCGTCGAGAAATA
TGGCTACACACACCTTTCTGCAGGAGAGCTGCTTCGTGATGAAAGGAAGAACCCAGATTCACAGTATGGTGAACTTATTG
AAAAGTACATTAAAGAAGGAAAGATTGTACCAGTTGAGATAACCATCAGTTTATTAAAGAGGGAAATGGATCAGACAATG
GCTGCCAATGCTCAGAAGAATAAATTTTTGATTGATGGGTTTCCAAGAAATCAAGACAACCTTCAAGGTTGGAACAGGAC
CATGGATGGGAAAGCAGATGTATCTTTCGTTCTGTTTTTTGACTGTAATAATGAGATCTGTATTGAACGATGTCTTGAGA
GGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGCAGAATTCAGACCTACCTTCAGTCAACA
AAGCCGATTATTGACTTATATGAAGAAATGGGGAAAGTGAAGAAAATAGATGCTTCTAAATCTGTTGATGAAGTTTTTGA
TGAAGTTGTGAAGATTTTTGACAAGGAAGGCTAA

Library Parental gene expression (RPM)
SRP051959_spleen 29 .14 RPM
SRP051959_skeletal_muscle 16 .68 RPM
SRP051959_lymph_node 23 .99 RPM
SRP051959_lung 30 .36 RPM
SRP051959_liver 48 .80 RPM
SRP051959_kidney 41 .71 RPM
SRP051959_heart 23 .63 RPM
SRP051959_colon 94 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000012 ortholog_one2one 2 retrogenes
retro_amel_1074, retro_amel_1711,
Choloepus hoffmanni ENSCHOG00000004014 ortholog_one2many 2 retrogenes
retro_chof_609, retro_chof_840,
Felis catus ENSFCAG00000025426 ortholog_one2one 1 retrogene
retro_fcat_1259,
Macaca mulatta ENSMMUG00000017375 ortholog_one2many 2 retrogenes
retro_mmul_1572, retro_mmul_66,
Otolemur garnettii ENSOGAG00000026904 ortholog_one2one 2 retrogenes
retro_ogar_1589, retro_ogar_3204,
Pongo abelii ENSPPYG00000001380 ortholog_one2one 1 retrogene
retro_pabe_1369,
Sorex araneus ENSSARG00000009745 ortholog_one2one 2 retrogenes
retro_sara_199, retro_sara_294,
Sus scrofa ENSSSCG00000003885 possible_ortholog 1 retrogene
retro_sscr_454,
Tupaia belangeri ENSTBEG00000017494 ortholog_one2one 2 retrogenes
retro_tbel_3597, retro_tbel_691,
Tarsius syrichta ENSTSYG00000007511 ortholog_one2one 1 retrogene
retro_tsyr_319,
Vicugna pacos ENSVPAG00000004127 ortholog_one2one 2 retrogenes
retro_vpac_345, retro_vpac_373,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2652 91.92 100.00
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2. retro_cjac_2992 89.34 100.00
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Download FASTA sequences of all ENSCJAG00000021250 retrocopies