Parental gene:

CMPK1, ENSSSCG00000003885

Aliases:None
Description:UMP-CMP kinase [Source:UniProtKB/Swiss-Prot;Acc:Q29561]
Organism:Pig (Sus scrofa)
Coordinates:6:151712183..151748395(-)


>ENSSSCG00000003885
ATGAGGCCGAAGGTCGTGTTCGTCCTCGGAGGTCCCGGCGCCGGCAAGGGGACCCAGTGCGCCCGTATCGTCGAGAAATA
TGGCTACACACACCTTTCTGCCGGAGAACTTCTTCGTGATGAAAGGAAGAACCCCGATTCACAGTATGGCGAACTGATTG
AAAAGTACATTAAAGATGGAAAGATCGTGCCAGTTGAGATAACCATCAGTTTGTTAAGGAGGGAAATGGATCAGACAATG
GCGGCCAATGCTCAGAAGAATAAATTCTTAATTGATGGGTTTCCAAGAAATCAAGACAACCTTCAAGGTTGGAACAAGAC
CATGGATGGGAAAGCTGATGTATCTTTCGTTTTGTTTTTTGACTGTAATAATGAGATCTGTATTGAACGATGTCTTGAGA
GGGGAAAGAGTAGTGGTAGGAGTGATGACAACAGAGAGAGCTTGGAAAAGAGAATTCAAACCTATCTTCAGTCAACAAAG
CCAATTATTGACTTATATGAAGAAATGGGGAAAGTCAAGAAAATAGATGCTTCTAAATCTGTTGATGAAGTTTTTGATGA
AGTTGTGAAGATTTTTGACAAAGAAGGCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 22 .70 RPM
SRP014902_testis 13 .15 RPM
SRP018856_adipose 8 .03 RPM
SRP018288_kidney 24 .43 RPM
SRP018288_lung 22 .30 RPM
SRP018288_liver 19 .67 RPM
SRP018288_heart 7 .88 RPM
SRP035408_liver 10 .69 RPM
SRP035408_brain 4 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000012 possible_ortholog 2 retrogenes
retro_amel_1074, retro_amel_1711,
Canis familiaris ENSCAFG00000004030 ortholog_one2one 1 retrogene
retro_cfam_1729,
Choloepus hoffmanni ENSCHOG00000004014 possible_ortholog 2 retrogenes
retro_chof_609, retro_chof_840,
Callithrix jacchus ENSCJAG00000021250 possible_ortholog 2 retrogenes
retro_cjac_2652, retro_cjac_2992,
Cavia porcellus ENSCPOG00000014747 ortholog_one2one 4 retrogenes
retro_cpor_1070, retro_cpor_1295, retro_cpor_417, retro_cpor_799,
Felis catus ENSFCAG00000025426 possible_ortholog 1 retrogene
retro_fcat_1259,
Macaca mulatta ENSMMUG00000017375 possible_ortholog 2 retrogenes
retro_mmul_1572, retro_mmul_66,
Mustela putorius furo ENSMPUG00000012394 ortholog_one2one 1 retrogene
retro_mputfur_1061,
Mus musculus ENSMUSG00000028719 ortholog_one2one 1 retrogene
retro_mmus_2576,
Otolemur garnettii ENSOGAG00000026904 possible_ortholog 2 retrogenes
retro_ogar_1589, retro_ogar_3204,
Pongo abelii ENSPPYG00000001380 possible_ortholog 1 retrogene
retro_pabe_1369,
Rattus norvegicus ENSRNOG00000007775 ortholog_one2one 1 retrogene
retro_rnor_1940,
Sorex araneus ENSSARG00000009745 possible_ortholog 2 retrogenes
retro_sara_199, retro_sara_294,
Tupaia belangeri ENSTBEG00000017494 possible_ortholog 2 retrogenes
retro_tbel_3597, retro_tbel_691,
Tarsius syrichta ENSTSYG00000007511 possible_ortholog 1 retrogene
retro_tsyr_319,
Vicugna pacos ENSVPAG00000004127 possible_ortholog 2 retrogenes
retro_vpac_345, retro_vpac_373,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_454 83.93 56.63
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Download FASTA sequences of all ENSSSCG00000003885 retrocopies