Parental gene:

CCT6A, ENSCJAG00000021279

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:17:74561247..74576204(+)


>ENSCJAG00000021279
ATGGCGGCGGTGAAGACCCTGAACCCCAAGGCCGAGGTGGCCCGAGCACAGGCGGCGCTGGCGGTCAACATCAGCGCGGC
GCGGGGCCTGCAGGACGTGCTGAGGACGAACCTGGGGCCCAAGGGCACCATGAAGATGCTTGTTTCTGGCGCCGGAGACA
TCAAGCTTACTAAAGACGGCAACGTGCTGCTTCACGAAATGCAAATTCAGCACCCAACAGCTTCCTTAATAGCAAAGGTA
GCAACAGCCCAGGATGATATAACTGGTGATGGTACGACTTCCAACGTCCTGATCATTGGAGAGCTGCTGAAACAAGCGGA
CCTCTACGTTTCTGAAGGCCTTCATCCCAGAATAATTACTGAAGGATTTGAAGCTGCAAAGGAAAAGGCCCTTCAGTTTT
TGGAAGAAGTCAAAGTGAGCAAAGAGATGGACAGGGAAACACTTATCGATGTGGCCAGAACGTCTCTTCGTACTAAAGTT
CATGCTGAACTTGCAGATGTCTTAACGGAGGCTGTAGTGGACTCCATTTTGGCCATTAAGAAACAAGATGAGCCTGTTGA
TCTCTTCATGATTGAGATTATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGAGGGCTTGTTTTGGACC
ATGGAGCACGGCATCCTGAAATGAAGAAAAGGGTGGAAGATGCATACATCCTCACATGTAATGTGTCACTAGAATATGAA
AAAACAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAGAGAGAGAAAAACTTGTAAAAGCTGAAAGAAAATTCAT
TGAAGATAGAATTAAAAAAATAATAGAACTGAAAAGGAAAGTCTGTGGTGATTCAGATAAAGGATTTGTTGTTATTAATC
AAAAGGGAATCGACCCGTTTTCCTTGGATGCTCTTTCAAAGGAAGGCATAGTTGCTCTGCGCAGAGCTAAGAGGAGAAAC
ATGGAGAGGTTGACTCTTGCTTGTGGAGGGGTAGCCCTGAATTCTTTTGACGACCTAAGTCCTGACTGCTTGGGACATGC
AGGCCTTGTATATGAGTATACATTGGGAGAAGAGAAATTCACCTTTATTGAGAAATGTAACAATCCTCGTTCTGTCACAT
TATTGATCAAAGGACCAAATAAGCACACACTCACTCAGATCAAAGATGCAGTAAGGGATGGCTTGAGGGCTGTCAAAAAT
GCTATCGATGATGGCTGTGTGGTTCCAGGTGCTGGTGCTGTGGAAGTGGCAATGGCAGAAGCCCTGATGAAATACAAGCC
CAGTGTCAAGGGCAGGGCACAGCTTGGCGTCCAAGCATTTGCTGATGCATTGCTCATTATTCCCAAGGTTCTTGCTCAGA
ACTCTGGTTTTGACCTTCAGGAAACATTAGTTAAAATTCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGGAC
CTCAACACAGGTGAGCCAATGGTAGCAGCAGAAGTAGGCGTATGGGATAACTATTGTGTAAAGAAACAGCTTCTTCACTC
CTGCACTGTGATTGCCACCAACATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTCACTGAAAGGTTGA

Library Parental gene expression (RPM)
SRP051959_colon 60 .17 RPM
SRP051959_heart 76 .44 RPM
SRP051959_kidney 69 .35 RPM
SRP051959_liver 119 .96 RPM
SRP051959_lung 67 .40 RPM
SRP051959_lymph_node 92 .44 RPM
SRP051959_skeletal_muscle 125 .50 RPM
SRP051959_spleen 80 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016077 ortholog_one2many 1 retrogene
retro_amel_855,
Canis familiaris ENSCAFG00000010149 ortholog_one2one 1 retrogene
retro_cfam_431,
Choloepus hoffmanni ENSCHOG00000000654 ortholog_one2one 3 retrogenes
retro_chof_1183, retro_chof_1193, retro_chof_150,
Dipodomys ordii ENSDORG00000001249 ortholog_one2one 1 retrogene
retro_dord_617,
Felis catus ENSFCAG00000027654 ortholog_one2many 2 retrogenes
retro_fcat_1102, retro_fcat_320,
Homo sapiens ENSG00000146731 ortholog_one2one 2 retrogenes
retro_hsap_2741, retro_hsap_3290,
Gorilla gorilla ENSGGOG00000011439 ortholog_one2many 1 retrogene
retro_ggor_133,
Loxodonta africana ENSLAFG00000012791 ortholog_one2one 1 retrogene
retro_lafr_808,
Macaca mulatta ENSMMUG00000015272 ortholog_one2one 1 retrogene
retro_mmul_2582,
Monodelphis domestica ENSMODG00000006565 ortholog_one2one 1 retrogene
retro_mdom_1330,
Nomascus leucogenys ENSNLEG00000015664 ortholog_one2one 1 retrogene
retro_nleu_1355,
Oryctolagus cuniculus ENSOCUG00000017674 ortholog_one2one 1 retrogene
retro_ocun_468,
Procavia capensis ENSPCAG00000015532 ortholog_one2one 1 retrogene
retro_pcap_263,
Pongo abelii ENSPPYG00000025820 ortholog_one2one 1 retrogene
retro_pabe_2719,
Pan troglodytes ENSPTRG00000019206 ortholog_one2one 2 retrogenes
retro_ptro_1854, retro_ptro_2225,
Pteropus vampyrus ENSPVAG00000001421 ortholog_one2one 1 retrogene
retro_pvam_663,
Rattus norvegicus ENSRNOG00000000923 ortholog_one2many 1 retrogene
retro_rnor_2226,
Tursiops truncatus ENSTTRG00000015158 ortholog_one2one 1 retrogene
retro_ttru_1552,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_580 89.67 73.00
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2. retro_cjac_1320 71.43 56.40
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Download FASTA sequences of all ENSCJAG00000021279 retrocopies