Parental gene: | CCT6A, ENSPTRG00000019206 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 7:54709864..54722149(+) |
>ENSPTRG00000019206
ATGGCGGCGGTGAAGACCCTGAACCCCAAGGCCGAGGTGGCCCGAGCGCAGGCGGCGCTGGCGGTCAACATCAGCGCGGC
GCGGGGTCTGCAGGACGTGCTAAGGACCAACCTGGGGCCCAAGGGCACCATGAAGATGCTCGTTTCTGGCGCTGGAGACA
TCAAACTTACTAAAGACGGCAATGTGCTGCTTCACGAAATGCAAATTCAACACCCAACAGCTTCCTTAATAGCAAAGGTA
GCAACAGCCCAGGATGATATAACTGGTGATGGTACGACTTCTAATGTCCTAATCATTGGAGAGCTGCTGAAACAGGCGGA
TCTCTACATTTCTGAAGGCCTTCATCCCAGAATAATCACTGAAGGATTTGAAGCTGCAAAGGAAAAGGCCCTTCAGTTTT
TGGAAGAAGTCAAAGTAAGCAGAGAGATGGACAGGGAAACACTTATAGATGTGGCCAGAACATCTCTTCGTACTAAAGTT
CATGCTGAACTTGCAGATGTCTTAACAGAGGCTGTAGTGGACTCCATTTTGGCCATTAAAAAGCAAGATGAACCTATTGA
TCTCTTCATGATTGAGATCATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGAGGGCTTGTTTTGGACC
ACGGAGCACGGCATCCTGATATGAAGAAAAGGGTGGAGGATGCATACATCCTCACTTGTAACGTGTCATTAGAGTATGAA
AAAACAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAGAGAGAGAAAAACTCGTGAAAGCTGAAAGAAAATTCAT
TGAAGATAGAGTTAAAAAAATAATAGAACTGAAAAGGAAAGTCTGTGGCGATTCAGATAAAGGATTTGTTGTTATTAATC
AAAAGGGAATTGACCCCTTTTCCTTAGATGCTCTTTCAAAAGAAGGCATAGTCGCTCTGCGCAGAGCTAAAAGGAGAAAT
ATGGAGAGGCTGACTCTTGCTTGTGGTGGGGTAGCCCTGAATTCTTTTGACGACCTAAGTCCTGACTGCTTGGGACATGC
AGGACTTGTATATGAGTATACATTGGGAGAAGAGAAGTTTACCTTTATTGAGAAATGTAACAACCCTCGTTCTGTCACAT
TATTGATCAAAGGACCAAATAAGCACACACTCACTCAGATCAAAGATGCAGTGAGGGATGGCTTGAGGGCTGTCAAAAAT
GCTATTGATGATGGCTGTGTGGTTCCAGGTGCTGGTGCCGTGGAAGTGGCAATGGCAGAAGCCCTGATTAAACATAAGCC
CAGTGTAAAGGGCAGGGCACAGCTTGGAGTCCAAGCATTTGCTGATGCATTGCTCATTATTCCCAAGGTTCTTGCTCAGA
ACTCTGGTTTTGACCTTCAGGAAACATTAGTTAAAATTCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGGAC
CTGAACACAGGTGAGCCAATGGTAGCAGCAGAAGTAGGTGTATGGGATAACTATTGTGTAAAGAAACAGCTTCTTCACTC
CTGCACTGTGATTGCCACCAACATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTCTCTGAAAGGTTGA
ATGGCGGCGGTGAAGACCCTGAACCCCAAGGCCGAGGTGGCCCGAGCGCAGGCGGCGCTGGCGGTCAACATCAGCGCGGC
GCGGGGTCTGCAGGACGTGCTAAGGACCAACCTGGGGCCCAAGGGCACCATGAAGATGCTCGTTTCTGGCGCTGGAGACA
TCAAACTTACTAAAGACGGCAATGTGCTGCTTCACGAAATGCAAATTCAACACCCAACAGCTTCCTTAATAGCAAAGGTA
GCAACAGCCCAGGATGATATAACTGGTGATGGTACGACTTCTAATGTCCTAATCATTGGAGAGCTGCTGAAACAGGCGGA
TCTCTACATTTCTGAAGGCCTTCATCCCAGAATAATCACTGAAGGATTTGAAGCTGCAAAGGAAAAGGCCCTTCAGTTTT
TGGAAGAAGTCAAAGTAAGCAGAGAGATGGACAGGGAAACACTTATAGATGTGGCCAGAACATCTCTTCGTACTAAAGTT
CATGCTGAACTTGCAGATGTCTTAACAGAGGCTGTAGTGGACTCCATTTTGGCCATTAAAAAGCAAGATGAACCTATTGA
TCTCTTCATGATTGAGATCATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGAGGGCTTGTTTTGGACC
ACGGAGCACGGCATCCTGATATGAAGAAAAGGGTGGAGGATGCATACATCCTCACTTGTAACGTGTCATTAGAGTATGAA
AAAACAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAGAGAGAGAAAAACTCGTGAAAGCTGAAAGAAAATTCAT
TGAAGATAGAGTTAAAAAAATAATAGAACTGAAAAGGAAAGTCTGTGGCGATTCAGATAAAGGATTTGTTGTTATTAATC
AAAAGGGAATTGACCCCTTTTCCTTAGATGCTCTTTCAAAAGAAGGCATAGTCGCTCTGCGCAGAGCTAAAAGGAGAAAT
ATGGAGAGGCTGACTCTTGCTTGTGGTGGGGTAGCCCTGAATTCTTTTGACGACCTAAGTCCTGACTGCTTGGGACATGC
AGGACTTGTATATGAGTATACATTGGGAGAAGAGAAGTTTACCTTTATTGAGAAATGTAACAACCCTCGTTCTGTCACAT
TATTGATCAAAGGACCAAATAAGCACACACTCACTCAGATCAAAGATGCAGTGAGGGATGGCTTGAGGGCTGTCAAAAAT
GCTATTGATGATGGCTGTGTGGTTCCAGGTGCTGGTGCCGTGGAAGTGGCAATGGCAGAAGCCCTGATTAAACATAAGCC
CAGTGTAAAGGGCAGGGCACAGCTTGGAGTCCAAGCATTTGCTGATGCATTGCTCATTATTCCCAAGGTTCTTGCTCAGA
ACTCTGGTTTTGACCTTCAGGAAACATTAGTTAAAATTCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGGAC
CTGAACACAGGTGAGCCAATGGTAGCAGCAGAAGTAGGTGTATGGGATAACTATTGTGTAAAGAAACAGCTTCTTCACTC
CTGCACTGTGATTGCCACCAACATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTCTCTGAAAGGTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 69 .16 RPM |
| SRP007412_cerebellum | 127 .41 RPM |
| SRP007412_heart | 70 .04 RPM |
| SRP007412_kidney | 108 .24 RPM |
| SRP007412_liver | 90 .80 RPM |
| SRP007412_testis | 88 .94 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016077 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000010149 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000000654 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000021279 | ortholog_one2one | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000001249 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000027654 | ortholog_one2many | 2 retrogenes | |
| Homo sapiens | ENSG00000146731 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000011439 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000012791 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015272 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000006565 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015664 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000017674 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000015532 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000025820 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000001421 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000000923 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000015158 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1854 | 78.87 | 65.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2225 | 86.74 | 89.27 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000019206 retrocopies