Parental gene:

CCT6A, ENSG00000146731

Aliases:CCT6A, CCT-zeta, CCT-zeta-1, CCT6, Cctz, HTR3, MoDP-2, TCP-1-zeta, TCP20, TCPZ, TTCP20
Description:chaperonin containing TCP1, subunit 6A (zeta 1) [Source:HGNC Symbol;Acc:1620]
Organism:Human (Homo sapiens)
Coordinates:7:56119322..56131682(+)


>ENSG00000146731
ATGGCGGCGGTGAAGACCCTGAACCCCAAGGCCGAGGTGGCCCGAGCGCAGGCGGCGCTGGCGGTCAACATCAGCGCAGC
GCGGGGTCTGCAGGACGTGCTAAGGACCAACCTGGGGCCCAAGGGCACCATGAAGATGCTCGTTTCTGGCGCTGGAGACA
TCAAACTTACTAAAGACGGCAATGTGCTGCTTCACGAAATGCAAATTCAACACCCAACAGCTTCCTTAATAGCAAAGGTA
GCAACAGCCCAGGATGATATAACTGGTGATGGTACGACTTCTAATGTCCTAATCATTGGAGAGCTGCTGAAACAGGCGGA
TCTCTACATTTCTGAAGGCCTTCATCCTAGAATAATCACTGAAGGATTTGAAGCTGCAAAGGAAAAGGCCCTTCAGTTTT
TGGAAGAAGTCAAAGTAAGCAGAGAGATGGACAGGGAAACACTTATAGATGTGGCCAGAACATCTCTTCGTACTAAAGTT
CATGCTGAACTTGCAGATGTCTTAACAGAGGCTGTAGTGGACTCCATTTTGGCCATTAAAAAGCAAGATGAACCTATTGA
TCTCTTCATGATTGAGATCATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGAGGGCTTGTTTTGGACC
ACGGAGCACGGCATCCTGATATGAAGAAAAGGGTGGAGGATGCATACATCCTCACTTGTAACGTGTCATTAGAGTATGAG
AAAACAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAGAGAGAGAAAAACTCGTGAAAGCTGAAAGAAAATTCAT
TGAAGATAGGGTTAAAAAAATAATAGAACTGAAAAGGAAAGTCTGTGGCGATTCAGATAAAGGATTTGTTGTTATTAATC
AAAAGGGAATTGACCCCTTTTCCTTAGATGCTCTTTCAAAAGAAGGCATAGTTGCTCTGCGCAGAGCTAAAAGGAGAAAT
ATGGAGAGGCTGACTCTTGCTTGTGGTGGGGTAGCCCTGAATTCTTTTGACGACCTAAGTCCTGACTGCTTGGGACATGC
AGGACTTGTATATGAGTATACATTGGGAGAAGAGAAGTTTACCTTTATTGAGAAATGTAACAACCCTCGTTCTGTCACAT
TATTGATCAAAGGACCAAATAAGCACACACTCACTCAGATCAAAGATGCAGTGAGGGACGGCTTGAGGGCTGTCAAAAAT
GCTATTGATGATGGCTGTGTGGTTCCAGGTGCTGGTGCCGTGGAAGTGGCAATGGCAGAAGCCCTGATTAAACATAAGCC
CAGTGTAAAGGGCAGGGCACAGCTTGGAGTCCAAGCATTTGCTGATGCATTGCTCATTATTCCCAAGGTTCTTGCTCAGA
ACTCTGGTTTTGACCTTCAGGAAACATTAGTTAAAATTCAAGCAGAACATTCAGAATCAGGTCAGCTTGTGGGTGTGGAC
CTGAACACAGGTGAGCCAATGGTGGCAGCAGAAGTAGGCGTATGGGATAACTATTGTGTAAAGAAACAGCTTCTTCACTC
CTGCACTGTGATTGCCACCAACATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTCTCTGAAAGGTTGA

Library Parental gene expression (RPM)
bodymap2_adipose 181 .17 RPM
bodymap2_adrenal 177 .43 RPM
bodymap2_brain 179 .53 RPM
bodymap2_breast 140 .76 RPM
bodymap2_colon 243 .52 RPM
bodymap2_heart 77 .17 RPM
bodymap2_kidney 203 .58 RPM
bodymap2_liver 77 .71 RPM
bodymap2_lung 103 .60 RPM
bodymap2_lymph_node 152 .55 RPM
bodymap2_ovary 230 .57 RPM
bodymap2_prostate 142 .41 RPM
bodymap2_skeletal_muscle 178 .04 RPM
bodymap2_testis 334 .76 RPM
bodymap2_thyroid 226 .05 RPM
bodymap2_white_blood_cells 149 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016077 ortholog_one2many 1 retrogene
retro_amel_855,
Canis familiaris ENSCAFG00000010149 ortholog_one2one 1 retrogene
retro_cfam_431,
Choloepus hoffmanni ENSCHOG00000000654 ortholog_one2one 3 retrogenes
retro_chof_1183, retro_chof_1193, retro_chof_150,
Callithrix jacchus ENSCJAG00000021279 ortholog_one2one 2 retrogenes
retro_cjac_1320, retro_cjac_580,
Dipodomys ordii ENSDORG00000001249 ortholog_one2one 1 retrogene
retro_dord_617,
Felis catus ENSFCAG00000027654 ortholog_one2many 2 retrogenes
retro_fcat_1102, retro_fcat_320,
Gorilla gorilla ENSGGOG00000011439 ortholog_one2many 1 retrogene
retro_ggor_133,
Loxodonta africana ENSLAFG00000012791 ortholog_one2one 1 retrogene
retro_lafr_808,
Macaca mulatta ENSMMUG00000015272 ortholog_one2one 1 retrogene
retro_mmul_2582,
Monodelphis domestica ENSMODG00000006565 ortholog_one2one 1 retrogene
retro_mdom_1330,
Nomascus leucogenys ENSNLEG00000015664 ortholog_one2one 1 retrogene
retro_nleu_1355,
Oryctolagus cuniculus ENSOCUG00000017674 ortholog_one2one 1 retrogene
retro_ocun_468,
Procavia capensis ENSPCAG00000015532 ortholog_one2one 1 retrogene
retro_pcap_263,
Pongo abelii ENSPPYG00000025820 ortholog_one2one 1 retrogene
retro_pabe_2719,
Pan troglodytes ENSPTRG00000019206 ortholog_one2one 2 retrogenes
retro_ptro_1854, retro_ptro_2225,
Pteropus vampyrus ENSPVAG00000001421 ortholog_one2one 1 retrogene
retro_pvam_663,
Rattus norvegicus ENSRNOG00000000923 ortholog_one2many 1 retrogene
retro_rnor_2226,
Tursiops truncatus ENSTTRG00000015158 ortholog_one2one 1 retrogene
retro_ttru_1552,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_2741 77.93 56.40
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2. retro_hsap_3290 87.37 89.27
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Download FASTA sequences of all ENSG00000146731 retrocopies