Parental gene: | DDX18, ENSCJAG00000021414 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 6:91850096..91868639(+) |
>ENSCJAG00000021414
ATGTCTCACCTGCCGATGAAACTCCTGCGCAGGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGCGGAACCTAAAGTT
GCAGCATTGGGCCTCAAATCTGACCCTATCGGAAACTGAAAATGGAGATGTGTCTGAAGAAACAATGGGAGGTAGAAAGG
TTAAAAAATCAAAACATTCTATGAATGTGGGCTTCTCAGACGCCCAAAATGGAGATGTGTCTCAAGAAGCAGTGGAAAAT
ATAAAAGTTAAAAAATCTCCCCAGAAATCCATCATCTTAACCAATGGGGAAGGAGCAATGCAGTCTCCCAATTCAGTATT
GAAAAAGAAAAAGAAGAAGAAAAAGAGAAAAATGGTGAATGATGCTGGGCCTGATACAAAAAAAGCAAAAGCTGGAAACA
AAGGGGAATCTGAAGATGAAAGTGCTGAGACTCCTAAAGAAACAGAAAATAATGTGGAGAAGCCAAATAATGATGAAGAT
GACAGTGAGGTGCCCAGCCTGCCCCTGGGACTGACAGGTAAATTGGAGGATACATCATTTGCTTCTCTATCTAATCTTGT
CAATGAAAACACTCTGAAGGCAATAAAAGAAATGGGTTTTACAAACATGACTGAAATTCAGCATAAAAGTATAAGACCAC
TTCTGGAAGGCAGGGATCTTCTAGCAGCTGCAAAAACAGGCAGTGGTAAAACCCTGGCTTTTCTCATCCCTGCAGTTGAA
CTCATTGTTAAGTTAAAGTTCATGCCCAGGAATGGAACAGGAGTCCTTATTCTCTCACCTACTAGAGAACTAGCCATGCA
AACTTTTGGTGTTCTTAAGGAGCTAATGACTCACCACGTGCATACCTATGGGTTGATAATGGGTGGCAGTAACAGATCTG
CGGAAGCACAGAAACTTGCTAATGGGATCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCATATGCAGAATACC
CCAGGGTTTATGTATAAGAACCTGCAGTGTCTCGTTATTGATGAAGCTGATCGTATCTTGGATGTTGGGTTTGAAGAGGA
ATTAAAGCAAATTATTAAACTTTTGCCAACACGTAGACAGACTATGCTCTTTTCTGCCACCCAAACTCGAAAAGTTGAAG
ACCTGGCAAGGATTTCTCTGAAAAAGGAGCCATTGTATGTTGGTGTTGATGATGATAAAGCTAATGCAACAGTGGATGGT
CTTGAACAGGGGTATGTTGTTTGTCCTTCTGAAAAGAGATTCCTTCTGCTCTTTACATTCCTTAAGAAGAACCGAAAGAA
GAAACTTATGGTCTTCTTTTCATCTTGTATGTCCGTGAAATACCACTATGAGTTGCTGAATTACATTGATTTGCCCGTCT
TGGCCATTCATGGAAAGCAAAAGCAAAACAAGCGTACAACCACATTCTTCCAGTTCTGCAATGCAGATTCAGGAACACTA
TTGTGTACAGATGTGGCAGCAAGAGGACTGGACATTCCTGAAGTCGACTGGATTGTTCAGTATGACCCCCCTGATGACCC
TAAGGAATATATTCATCGTGTAGGTAGAACAGCCAGAGGCCTAAATGGGAGAGGGCATGCCTTGCTCATTTTGCGTCCAG
AAGAATTGGGTTTTCTTCGCTATTTGAAACAATCCAAGGTTCCATTAAGTGAATTTGACTTTTCCTGGTCTAAAATTTCT
GACATTCAGTCCCAGCTTGAGAAATTGATTGAAAAGAACTACTTTCTTCATAAGTCAGCCCAGGAAGCATATAAGTCGTA
CATACGTGCCTATGATTCCCATTCTCTGAAGCAGATCTTTAATGTTAATAACCTAAATTTGCCTCAGGTTGCTCTGTCAT
TTGGTTTTAAGGTGCCTCCCTTTGTTGATTTGAATGTCAACAGCAATGAAGGCAAGCAGAGAAAGCGAGGAGGCGGTGGC
GGATTTGGCTACCAGAAAACCAAAAAAGTTGAAAAGTCCAAAATCTTTAAACATATTAGCAAGAAATCGTCTGACAGCAG
GCAGTTTTCTCACTGA
ATGTCTCACCTGCCGATGAAACTCCTGCGCAGGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGCGGAACCTAAAGTT
GCAGCATTGGGCCTCAAATCTGACCCTATCGGAAACTGAAAATGGAGATGTGTCTGAAGAAACAATGGGAGGTAGAAAGG
TTAAAAAATCAAAACATTCTATGAATGTGGGCTTCTCAGACGCCCAAAATGGAGATGTGTCTCAAGAAGCAGTGGAAAAT
ATAAAAGTTAAAAAATCTCCCCAGAAATCCATCATCTTAACCAATGGGGAAGGAGCAATGCAGTCTCCCAATTCAGTATT
GAAAAAGAAAAAGAAGAAGAAAAAGAGAAAAATGGTGAATGATGCTGGGCCTGATACAAAAAAAGCAAAAGCTGGAAACA
AAGGGGAATCTGAAGATGAAAGTGCTGAGACTCCTAAAGAAACAGAAAATAATGTGGAGAAGCCAAATAATGATGAAGAT
GACAGTGAGGTGCCCAGCCTGCCCCTGGGACTGACAGGTAAATTGGAGGATACATCATTTGCTTCTCTATCTAATCTTGT
CAATGAAAACACTCTGAAGGCAATAAAAGAAATGGGTTTTACAAACATGACTGAAATTCAGCATAAAAGTATAAGACCAC
TTCTGGAAGGCAGGGATCTTCTAGCAGCTGCAAAAACAGGCAGTGGTAAAACCCTGGCTTTTCTCATCCCTGCAGTTGAA
CTCATTGTTAAGTTAAAGTTCATGCCCAGGAATGGAACAGGAGTCCTTATTCTCTCACCTACTAGAGAACTAGCCATGCA
AACTTTTGGTGTTCTTAAGGAGCTAATGACTCACCACGTGCATACCTATGGGTTGATAATGGGTGGCAGTAACAGATCTG
CGGAAGCACAGAAACTTGCTAATGGGATCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCATATGCAGAATACC
CCAGGGTTTATGTATAAGAACCTGCAGTGTCTCGTTATTGATGAAGCTGATCGTATCTTGGATGTTGGGTTTGAAGAGGA
ATTAAAGCAAATTATTAAACTTTTGCCAACACGTAGACAGACTATGCTCTTTTCTGCCACCCAAACTCGAAAAGTTGAAG
ACCTGGCAAGGATTTCTCTGAAAAAGGAGCCATTGTATGTTGGTGTTGATGATGATAAAGCTAATGCAACAGTGGATGGT
CTTGAACAGGGGTATGTTGTTTGTCCTTCTGAAAAGAGATTCCTTCTGCTCTTTACATTCCTTAAGAAGAACCGAAAGAA
GAAACTTATGGTCTTCTTTTCATCTTGTATGTCCGTGAAATACCACTATGAGTTGCTGAATTACATTGATTTGCCCGTCT
TGGCCATTCATGGAAAGCAAAAGCAAAACAAGCGTACAACCACATTCTTCCAGTTCTGCAATGCAGATTCAGGAACACTA
TTGTGTACAGATGTGGCAGCAAGAGGACTGGACATTCCTGAAGTCGACTGGATTGTTCAGTATGACCCCCCTGATGACCC
TAAGGAATATATTCATCGTGTAGGTAGAACAGCCAGAGGCCTAAATGGGAGAGGGCATGCCTTGCTCATTTTGCGTCCAG
AAGAATTGGGTTTTCTTCGCTATTTGAAACAATCCAAGGTTCCATTAAGTGAATTTGACTTTTCCTGGTCTAAAATTTCT
GACATTCAGTCCCAGCTTGAGAAATTGATTGAAAAGAACTACTTTCTTCATAAGTCAGCCCAGGAAGCATATAAGTCGTA
CATACGTGCCTATGATTCCCATTCTCTGAAGCAGATCTTTAATGTTAATAACCTAAATTTGCCTCAGGTTGCTCTGTCAT
TTGGTTTTAAGGTGCCTCCCTTTGTTGATTTGAATGTCAACAGCAATGAAGGCAAGCAGAGAAAGCGAGGAGGCGGTGGC
GGATTTGGCTACCAGAAAACCAAAAAAGTTGAAAAGTCCAAAATCTTTAAACATATTAGCAAGAAATCGTCTGACAGCAG
GCAGTTTTCTCACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 31 .93 RPM |
| SRP051959_skeletal_muscle | 24 .92 RPM |
| SRP051959_lymph_node | 36 .07 RPM |
| SRP051959_lung | 28 .70 RPM |
| SRP051959_liver | 28 .90 RPM |
| SRP051959_kidney | 29 .31 RPM |
| SRP051959_heart | 21 .75 RPM |
| SRP051959_colon | 26 .60 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000004950 | possible_ortholog | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000004191 | possible_ortholog | 6 retrogenes | |
| Echinops telfairi | ENSETEG00000017166 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000017590 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000017607 | possible_ortholog | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000000533 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000001674 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000001701 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_644 | 80.91 | 67.61 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_753 | 71.78 | 65.28 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2309 | 84.03 | 62.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_2743 | 97.16 | 63.50 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_4179 | 92.07 | 95.82 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000021414 retrocopies