Parental gene:

DDX18, ENSCJAG00000021414

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:91850096..91868639(+)


>ENSCJAG00000021414
ATGTCTCACCTGCCGATGAAACTCCTGCGCAGGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGCGGAACCTAAAGTT
GCAGCATTGGGCCTCAAATCTGACCCTATCGGAAACTGAAAATGGAGATGTGTCTGAAGAAACAATGGGAGGTAGAAAGG
TTAAAAAATCAAAACATTCTATGAATGTGGGCTTCTCAGACGCCCAAAATGGAGATGTGTCTCAAGAAGCAGTGGAAAAT
ATAAAAGTTAAAAAATCTCCCCAGAAATCCATCATCTTAACCAATGGGGAAGGAGCAATGCAGTCTCCCAATTCAGTATT
GAAAAAGAAAAAGAAGAAGAAAAAGAGAAAAATGGTGAATGATGCTGGGCCTGATACAAAAAAAGCAAAAGCTGGAAACA
AAGGGGAATCTGAAGATGAAAGTGCTGAGACTCCTAAAGAAACAGAAAATAATGTGGAGAAGCCAAATAATGATGAAGAT
GACAGTGAGGTGCCCAGCCTGCCCCTGGGACTGACAGGTAAATTGGAGGATACATCATTTGCTTCTCTATCTAATCTTGT
CAATGAAAACACTCTGAAGGCAATAAAAGAAATGGGTTTTACAAACATGACTGAAATTCAGCATAAAAGTATAAGACCAC
TTCTGGAAGGCAGGGATCTTCTAGCAGCTGCAAAAACAGGCAGTGGTAAAACCCTGGCTTTTCTCATCCCTGCAGTTGAA
CTCATTGTTAAGTTAAAGTTCATGCCCAGGAATGGAACAGGAGTCCTTATTCTCTCACCTACTAGAGAACTAGCCATGCA
AACTTTTGGTGTTCTTAAGGAGCTAATGACTCACCACGTGCATACCTATGGGTTGATAATGGGTGGCAGTAACAGATCTG
CGGAAGCACAGAAACTTGCTAATGGGATCAACATCATTGTGGCCACACCAGGCCGTCTGCTGGACCATATGCAGAATACC
CCAGGGTTTATGTATAAGAACCTGCAGTGTCTCGTTATTGATGAAGCTGATCGTATCTTGGATGTTGGGTTTGAAGAGGA
ATTAAAGCAAATTATTAAACTTTTGCCAACACGTAGACAGACTATGCTCTTTTCTGCCACCCAAACTCGAAAAGTTGAAG
ACCTGGCAAGGATTTCTCTGAAAAAGGAGCCATTGTATGTTGGTGTTGATGATGATAAAGCTAATGCAACAGTGGATGGT
CTTGAACAGGGGTATGTTGTTTGTCCTTCTGAAAAGAGATTCCTTCTGCTCTTTACATTCCTTAAGAAGAACCGAAAGAA
GAAACTTATGGTCTTCTTTTCATCTTGTATGTCCGTGAAATACCACTATGAGTTGCTGAATTACATTGATTTGCCCGTCT
TGGCCATTCATGGAAAGCAAAAGCAAAACAAGCGTACAACCACATTCTTCCAGTTCTGCAATGCAGATTCAGGAACACTA
TTGTGTACAGATGTGGCAGCAAGAGGACTGGACATTCCTGAAGTCGACTGGATTGTTCAGTATGACCCCCCTGATGACCC
TAAGGAATATATTCATCGTGTAGGTAGAACAGCCAGAGGCCTAAATGGGAGAGGGCATGCCTTGCTCATTTTGCGTCCAG
AAGAATTGGGTTTTCTTCGCTATTTGAAACAATCCAAGGTTCCATTAAGTGAATTTGACTTTTCCTGGTCTAAAATTTCT
GACATTCAGTCCCAGCTTGAGAAATTGATTGAAAAGAACTACTTTCTTCATAAGTCAGCCCAGGAAGCATATAAGTCGTA
CATACGTGCCTATGATTCCCATTCTCTGAAGCAGATCTTTAATGTTAATAACCTAAATTTGCCTCAGGTTGCTCTGTCAT
TTGGTTTTAAGGTGCCTCCCTTTGTTGATTTGAATGTCAACAGCAATGAAGGCAAGCAGAGAAAGCGAGGAGGCGGTGGC
GGATTTGGCTACCAGAAAACCAAAAAAGTTGAAAAGTCCAAAATCTTTAAACATATTAGCAAGAAATCGTCTGACAGCAG
GCAGTTTTCTCACTGA

Library Parental gene expression (RPM)
SRP051959_colon 26 .60 RPM
SRP051959_heart 21 .75 RPM
SRP051959_kidney 29 .31 RPM
SRP051959_liver 28 .90 RPM
SRP051959_lung 28 .70 RPM
SRP051959_lymph_node 36 .07 RPM
SRP051959_skeletal_muscle 24 .92 RPM
SRP051959_spleen 31 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000004950 possible_ortholog 2 retrogenes
retro_cfam_1404, retro_cfam_2116,
Choloepus hoffmanni ENSCHOG00000004191 possible_ortholog 6 retrogenes
retro_chof_1221, retro_chof_1539, retro_chof_1636, retro_chof_2416, retro_chof_2418, retro_chof_721,
Echinops telfairi ENSETEG00000017166 ortholog_one2many 2 retrogenes
retro_etel_1919, retro_etel_297,
Microcebus murinus ENSMICG00000017590 ortholog_one2many 1 retrogene
retro_mmur_1560,
Myotis lucifugus ENSMLUG00000017607 possible_ortholog 1 retrogene
retro_mluc_2279,
Monodelphis domestica ENSMODG00000000533 ortholog_one2many 1 retrogene
retro_mdom_414,
Mus musculus ENSMUSG00000001674 possible_ortholog 1 retrogene
retro_mmus_2865,
Ochotona princeps ENSOPRG00000001701 possible_ortholog 1 retrogene
retro_opri_1039,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_644 80.91 67.61
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2. retro_cjac_753 71.78 65.28
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3. retro_cjac_2309 84.03 62.19
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4. retro_cjac_2743 97.16 63.50
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5. retro_cjac_4179 92.07 95.82
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Download FASTA sequences of all ENSCJAG00000021414 retrocopies