Parental gene:

ATP1B3, ENSCPOG00000003739

Aliases:None
Description:Sodium/potassium-transporting ATPase subunit beta-3 [Source:UniProtKB/Swiss-Prot;Acc:Q60489]
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_8:38713033..38749545(+)


>ENSCPOG00000003739
ATGACGAAGAGTGAGAAGAAGTCTTTGAACGAGAGCCTGGCCCAGTGGAAGCTCTTCTTGTACAATCCGACCACCCGAGA
GTTCCTGGGGCGCACCGCCAAGAGCTGGGGTTTGATCTTGCTCTTCTACCTAGTGTTTTATGGGTTCCTGGCTGCACTCT
TCACATTCACAATGTGGGCTATGCTTCAGACTCTGAATGATGAGATTCCAAAATACCGTGACCAGATTCCTAGTCCAGGA
CTCATGGTTTTCCCAAAACCAGTGACTGCATTGGAATATACATTTAGTGTGTCTGATCCAAGTTCCTATGAAGGGTACAT
AAAAGACCTTAAGAAGTTTCTAAAGTCATATTCTTTAGACGAGCAGAAGAATCTCAACAAGTGTACTGATGGAGTGCTTT
TTGAACAGACGGGTCCAGTGTATGCTGCATGTCAGTTTCCTGACTCCTTACTTGAAGCGTGCAGTGGTACAGACGATCCT
GACTTTGGCTATTCCCAAGGACAACCTTGTGTTCTTGTGAAAATGAATAGAATCATTGGATTAAAGCCTGAAGGGTCACC
AAGGATAGACTGTATTTCAAAGGATGAAAACACAGCGATGGTATCAACTTATCCTAATCAAGGAGTTATAGACTTAAAGT
ATTTTCCATATTATGGAAAGAAACTGCATGTGGGCTATCTACAGCCACTGGTGGCTGTCCAGGTCTCCTTTGGATCTAAC
AGTACCAAGAAAGAAGTAACGGTAGAGTGCAAAATTGAGGGATCGAAGAACCTAAGAAACGAGGACGATCGAGACAAGTT
TTTGGGAAGAGTTGCATTCAAAATCACAGCACGCGCGTAG

Library Parental gene expression (RPM)
SRP017611_brain 46 .76 RPM
SRP017611_kidney 84 .48 RPM
SRP017611_liver 64 .03 RPM
SRP040447_lung 81 .44 RPM
SRP040447_skeletal_muscle 45 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014140 ortholog_one2many 5 retrogenes
retro_btau_1136, retro_btau_1322, retro_btau_1743, retro_btau_318, retro_btau_920,
Choloepus hoffmanni ENSCHOG00000007515 ortholog_one2many 4 retrogenes
retro_chof_1000, retro_chof_1421, retro_chof_2393, retro_chof_2445,
Callithrix jacchus ENSCJAG00000001981 ortholog_many2many 1 retrogene
retro_cjac_309,
Equus caballus ENSECAG00000019885 ortholog_one2many 2 retrogenes
retro_ecab_1084, retro_ecab_468,
Homo sapiens ENSG00000069849 ortholog_one2many 2 retrogenes
retro_hsap_1387, retro_hsap_2263,
Loxodonta africana ENSLAFG00000010553 ortholog_one2many 1 retrogene
retro_lafr_815,
Mus musculus ENSMUSG00000032412 ortholog_one2many 2 retrogenes
retro_mmus_2174, retro_mmus_3427,
Nomascus leucogenys ENSNLEG00000004663 ortholog_one2many 1 retrogene
retro_nleu_1286,
Otolemur garnettii ENSOGAG00000008662 ortholog_one2many 1 retrogene
retro_ogar_2284,
Procavia capensis ENSPCAG00000013927 ortholog_one2many 1 retrogene
retro_pcap_350,
Pongo abelii ENSPPYG00000014169 ortholog_one2many 1 retrogene
retro_pabe_1953,
Pan troglodytes ENSPTRG00000015476 ortholog_one2many 2 retrogenes
retro_ptro_1603, retro_ptro_951,
Rattus norvegicus ENSRNOG00000011501 ortholog_one2many 2 retrogenes
retro_rnor_2571, retro_rnor_789,
Sus scrofa ENSSSCG00000011676 ortholog_many2many 3 retrogenes
retro_sscr_889, retro_sscr_945, retro_sscr_95,
Ictidomys tridecemlineatus ENSSTOG00000013235 ortholog_one2many 1 retrogene
retro_itri_1663,
Tupaia belangeri ENSTBEG00000001004 ortholog_many2many 1 retrogene
retro_tbel_3620,
Tarsius syrichta ENSTSYG00000000222 ortholog_one2many 1 retrogene
retro_tsyr_330,
Tursiops truncatus ENSTTRG00000012038 ortholog_one2many 1 retrogene
retro_ttru_333,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_222 54.79 51.97
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2. retro_cpor_1181 64.18 70.25
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3. retro_cpor_1468 74.76 73.84
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4. retro_cpor_1506 67.90 57.71
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Download FASTA sequences of all ENSCPOG00000003739 retrocopies