Parental gene:

EIF4A2, ENSCPOG00000011183

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_7:51727965..51733355(+)


>ENSCPOG00000011183
ATGTCTGGTGGTTCTGCGGATTATAACAGCAGAGAACATGGAGGCCCAGAGGGAATGGACCCCGATGGTGTCATCGAGAG
CAACTGGAATGAGATTGTCGATAACTTTGATGATATGAATTTAAAGGAATCACTTCTTCGGGGCATCTATGCTTACGGTT
TTGAGAAGCCTTCAGCTATTCAGCAAAGAGCTATTATTCCTTGTATCAAAGGATATGATGTGATTGCTCAAGCTCAGTCA
GGTACTGGCAAGACAGCCACATTTGCTATTTCCATCCTGCAACAGTTGGAGATTGAGTTCAAGGAGACCCAAGCACTAGT
ATTGGCCCCCACCAGAGAACTGGCTCAACAGATCCAAAAGGTAATTCTGGCACTTGGAGATTATATGGGAGCAACTTGCC
ATGCCTGCATTGGTGGAACAAATGTTCGGAATGAAATGCAAAAACTGCAGGCTGAAGCACCACACATTGTTGTTGGAACA
CCAGGGAGAGTATTTGATATGTTAAACAGAAGATACCTTTCTCCAAAATGGATCAAAATGTTTGTTTTGGATGAAGCAGA
TGAAATGTTGAGCCGAGGGTTTAAGGATCAAATCTATGAGATTTTCCAAAAACTAAATACAAGTATTCAGGTTGTGTTGC
TTTCTGCCACAATGCCAACTGATGTGTTGGAAGTGACCAAAAAATTCATGAGAGATCCAATTCGGATTCTGGTGAAGAAA
GAAGAACTGACCCTTGAAGGAATCAAACAGTTCTACATTAATGTTGAAAGAGAGGAATGGAAGTTGGATACACTTTGTGA
TTTGTATGAGACACTCACCATTACGCAGGCTGTTATTTTTCTCAATACGAGGCGCAAGGTGGATTGGCTTACTGAGAAAA
TGCATGCCAGGGATTTCACAGTTTCTGCTCTGCATGGTGACATGGATCAGAAAGAGAGAGATGTTATCATGAGGGAATTC
CGATCAGGGTCCAGCCGTGTTCTGATCACTACTGACTTGTTGGCTCGTGGAATTGATGTGCAACAAGTGTCTTTGGTTAT
AAACTATGATCTACCTACCAATCGTGAAAACTACATTCACAGAATTGGCAGAGGGGGTCGATTTGGGAGGAAAGGTGTGG
CTATAAACTTTGTTACTGAAGAAGACAAGAGGATTCTTCGTGACATTGAGACTTTCTACAATACTACAGTGGAGGAAATG
CCCATGAATGTGGCCGACCTTATTTAA

Library Parental gene expression (RPM)
SRP017611_brain 393 .13 RPM
SRP017611_kidney 326 .21 RPM
SRP017611_liver 280 .10 RPM
SRP040447_lung 246 .13 RPM
SRP040447_skeletal_muscle 309 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014724 ortholog_one2one 2 retrogenes
retro_btau_258, retro_btau_522,
Canis familiaris ENSCAFG00000013659 ortholog_one2one 1 retrogene
retro_cfam_378,
Cavia porcellus ENSCPOG00000004900 within_species_paralog 1 retrogene
retro_cpor_1088,
Dasypus novemcinctus ENSDNOG00000011502 ortholog_one2one 5 retrogenes
retro_dnov_1264, retro_dnov_2018, retro_dnov_2066, retro_dnov_648, retro_dnov_869,
Echinops telfairi ENSETEG00000018565 ortholog_one2one 3 retrogenes
retro_etel_1174, retro_etel_2164, retro_etel_451,
Homo sapiens ENSG00000156976 ortholog_one2one 2 retrogenes
retro_hsap_593, retro_hsap_878,
Gorilla gorilla ENSGGOG00000005867 ortholog_one2one 2 retrogenes
retro_ggor_525, retro_ggor_712,
Macropus eugenii ENSMEUG00000011737 ortholog_one2one 1 retrogene
retro_meug_237,
Microcebus murinus ENSMICG00000007377 ortholog_one2one 1 retrogene
retro_mmur_525,
Macaca mulatta ENSMMUG00000003702 ortholog_one2many 2 retrogenes
retro_mmul_1055, retro_mmul_2450,
Nomascus leucogenys ENSNLEG00000006633 ortholog_one2one 1 retrogene
retro_nleu_2589,
Oryctolagus cuniculus ENSOCUG00000005011 ortholog_one2one 3 retrogenes
retro_ocun_392, retro_ocun_696, retro_ocun_763,
Otolemur garnettii ENSOGAG00000010729 ortholog_one2one 2 retrogenes
retro_ogar_2830, retro_ogar_943,
Ochotona princeps ENSOPRG00000004170 ortholog_one2one 1 retrogene
retro_opri_498,
Pongo abelii ENSPPYG00000014384 ortholog_one2one 2 retrogenes
retro_pabe_596, retro_pabe_677,
Pan troglodytes ENSPTRG00000015718 ortholog_one2one 1 retrogene
retro_ptro_437,
Rattus norvegicus ENSRNOG00000001815 ortholog_one2one 2 retrogenes
retro_rnor_1163, retro_rnor_2340,
Ictidomys tridecemlineatus ENSSTOG00000012601 ortholog_one2one 1 retrogene
retro_itri_858,
Tupaia belangeri ENSTBEG00000002268 ortholog_one2one 11 retrogenes
retro_tbel_114, retro_tbel_1488, retro_tbel_1500, retro_tbel_2048, retro_tbel_2524, retro_tbel_2729, retro_tbel_2733, retro_tbel_3159, retro_tbel_3793, retro_tbel_4599, retro_tbel_841,
Takifugu rubripes ENSTRUG00000005660 ortholog_one2one 2 retrogenes
retro_trub_14, retro_trub_6,
Tarsius syrichta ENSTSYG00000013050 ortholog_one2one 3 retrogenes
retro_tsyr_1905, retro_tsyr_903, retro_tsyr_935,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_639 96.47 83.33
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Download FASTA sequences of all ENSCPOG00000011183 retrocopies